RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 MCTP1Q6DN14 999 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 TMCO2Q7Z6W1 182 aaPredicted RBP17.02■□□□□ 0.32
LIMS1-212ENST00000474038 HERC6Q8IVU3 1022 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 USP38Q8NB14 1042 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 PHOSPHO2Q8TCD6 241 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 BBXQ8WY36 941 aaPredicted RBP17.02■□□□□ 0.32
LIMS1-212ENST00000474038 INTS4Q96HW7 963 aaKnown RBP17.02■□□□□ 0.32
LIMS1-212ENST00000474038 MTMR9Q96QG7 549 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 GAS2L1Q99501 681 aaPredicted RBP17.02■□□□□ 0.32
LIMS1-212ENST00000474038 TMEM60Q9H2L4 133 aa17.02■□□□□ 0.32
LIMS1-212ENST00000474038 COL1A2P08123 1366 aa17.02■□□□□ 0.31
LIMS1-212ENST00000474038 RSPH10B2B2RC85 870 aa17.01■□□□□ 0.31
LIMS1-212ENST00000474038 ZBTB42B2RXF5 422 aa17.01■□□□□ 0.31
LIMS1-212ENST00000474038 ARHGEF15O94989 841 aa17.01■□□□□ 0.31
LIMS1-212ENST00000474038 CTSHP09668 335 aa17.01■□□□□ 0.31
LIMS1-212ENST00000474038 RSPH10BP0C881 870 aa17.01■□□□□ 0.31
LIMS1-212ENST00000474038 KCNJ6P48051 423 aa17.01■□□□□ 0.31
LIMS1-212ENST00000474038 TOB1P50616 345 aaPredicted RBP17.01■□□□□ 0.31
LIMS1-212ENST00000474038 PRKCEQ02156 737 aa17.01■□□□□ 0.31
LIMS1-212ENST00000474038 ZNF174Q15697 407 aa17.01■□□□□ 0.31
LIMS1-212ENST00000474038 ZNF484Q5JVG2 852 aa17.01■□□□□ 0.31
LIMS1-212ENST00000474038 TAF2Q6P1X5 1199 aa17.01■□□□□ 0.31
LIMS1-212ENST00000474038 TRMT1LQ7Z2T5 733 aaKnown RBP17.01■□□□□ 0.31
LIMS1-212ENST00000474038 NOL7Q9UMY1 257 aaKnown RBP17.01■□□□□ 0.31
LIMS1-212ENST00000474038 PCDHA12Q9UN75 941 aa17.01■□□□□ 0.31
LIMS1-212ENST00000474038 CAND2O75155 1236 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 OATP04181 439 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 KLRC1P26715 233 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 TXKP42681 527 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 ORC2Q13416 577 aaPredicted RBP17■□□□□ 0.31
LIMS1-212ENST00000474038 NBR1Q14596 966 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 NCAPH2Q6IBW4 605 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 MTHFD1LQ6UB35 978 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 RPAINQ86UA6 219 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 BANK1Q8NDB2 785 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 DNAJB3Q8WWF6 145 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 FAM167AQ96KS9 214 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 OSBPL7Q9BZF2 842 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 TTC12Q9H892 705 aaPredicted RBP17■□□□□ 0.31
LIMS1-212ENST00000474038 PCDHA2Q9Y5H9 948 aa17■□□□□ 0.31
LIMS1-212ENST00000474038 DLL1O00548 723 aa16.99■□□□□ 0.31
LIMS1-212ENST00000474038 STBD1O95210 358 aa16.99■□□□□ 0.31
LIMS1-212ENST00000474038 IGFBP4P22692 258 aa16.99■□□□□ 0.31
LIMS1-212ENST00000474038 EPHA7Q15375 998 aa16.99■□□□□ 0.31
LIMS1-212ENST00000474038 FAM26DQ5JW98 314 aa16.99■□□□□ 0.31
LIMS1-212ENST00000474038 DBF4BQ8NFT6 615 aa16.99■□□□□ 0.31
LIMS1-212ENST00000474038 PPM1EQ8WY54 764 aa16.99■□□□□ 0.31
LIMS1-212ENST00000474038 FAM49AQ9H0Q0 323 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-212ENST00000474038 CERS4Q9HA82 394 aa16.99■□□□□ 0.31
LIMS1-212ENST00000474038 NRBP2Q9NSY0 501 aa16.99■□□□□ 0.31
LIMS1-212ENST00000474038 FOXD4L1Q9NU39 408 aa16.99■□□□□ 0.31
LIMS1-212ENST00000474038 MYH15Q9Y2K3 1946 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 SMIM35A0A1B0GVV1 85 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 ABHD14A-ACY1A0A1B0GW23 586 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 TLL1O43897 1013 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 CHRNA1P02708 482 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 OR52Z1P0C646 297 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 PDCP20941 246 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 QARSP47897 775 aaKnown RBP16.98■□□□□ 0.31
LIMS1-212ENST00000474038 PSMC5P62195 406 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 IKBKEQ14164 716 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 XKR3Q5GH77 459 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.98■□□□□ 0.31
LIMS1-212ENST00000474038 RSPH3Q86UC2 560 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 HSCBQ8IWL3 235 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 C4orf32Q8N8J7 132 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 CEP131Q9UPN4 1083 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 PCDHB6Q9Y5E3 794 aa16.98■□□□□ 0.31
LIMS1-212ENST00000474038 LCHNA4D1U4 455 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 TMEM150BA6NC51 233 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 EPOPA6NHQ4 379 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 RFXAPO00287 272 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 C22orf31O95567 290 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 P4HBP07237 508 aaKnown RBP16.97■□□□□ 0.31
LIMS1-212ENST00000474038 TAP1Q03518 808 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 MGAT3Q09327 533 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 TARBP2Q15633 366 aaKnown RBP16.97■□□□□ 0.31
LIMS1-212ENST00000474038 PLEKHG4Q58EX7 1191 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 FAM117BQ6P1L5 589 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 SPRED2Q7Z698 418 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 NIFKQ9BYG3 293 aaKnown RBP16.97■□□□□ 0.31
LIMS1-212ENST00000474038 RGL1Q9NZL6 768 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 WRAP73Q9P2S5 460 aaPredicted RBP16.97■□□□□ 0.31
LIMS1-212ENST00000474038 VCANP13611 3396 aa16.97■□□□□ 0.31
LIMS1-212ENST00000474038 VPS37CA5D8V6 355 aaPredicted RBP16.96■□□□□ 0.31
LIMS1-212ENST00000474038 POTEMA6NI47 508 aa16.96■□□□□ 0.31
LIMS1-212ENST00000474038 DDX11L8A8MPP1 907 aa16.96■□□□□ 0.31
LIMS1-212ENST00000474038 EFCAB14O75071 495 aa16.96■□□□□ 0.31
LIMS1-212ENST00000474038 RPLP2P05387 115 aaKnown RBP16.96■□□□□ 0.31
LIMS1-212ENST00000474038 SYT1P21579 422 aa16.96■□□□□ 0.31
LIMS1-212ENST00000474038 MRPS6P82932 125 aaKnown RBP16.96■□□□□ 0.31
LIMS1-212ENST00000474038 PTGDRQ13258 359 aa16.96■□□□□ 0.31
LIMS1-212ENST00000474038 MKRN4PQ13434 485 aaPredicted RBP16.96■□□□□ 0.31
LIMS1-212ENST00000474038 CCDC85BQ15834 202 aaPredicted RBP16.96■□□□□ 0.31
LIMS1-212ENST00000474038 RILPL1Q5EBL4 403 aa16.96■□□□□ 0.31
LIMS1-212ENST00000474038 KIAA0319LQ8IZA0 1049 aa16.96■□□□□ 0.31
LIMS1-212ENST00000474038 DYDC2Q96IM9 177 aa16.96■□□□□ 0.31
LIMS1-212ENST00000474038 EIF2AK1Q9BQI3 630 aaKnown RBP16.96■□□□□ 0.31
LIMS1-212ENST00000474038 LXNQ9BS40 222 aa16.96■□□□□ 0.31
LIMS1-212ENST00000474038 ZBED2Q9BTP6 218 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms