RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TMEM266Q2M3C6 531 aa21.3■■□□□ 1
CCDC88B-206ENST00000473405 TMEM40Q8WWA1 233 aa21.3■■□□□ 1
CCDC88B-206ENST00000473405 BBXQ8WY36 941 aaPredicted RBP21.3■■□□□ 1
CCDC88B-206ENST00000473405 LARP6Q9BRS8 491 aaKnown RBP21.3■■□□□ 1
CCDC88B-206ENST00000473405 CDHR5Q9HBB8 845 aa21.3■■□□□ 1
CCDC88B-206ENST00000473405 PCDHA10Q9Y5I2 948 aa21.3■■□□□ 1
CCDC88B-206ENST00000473405 MSH4O15457 936 aa21.29■■□□□ 1
CCDC88B-206ENST00000473405 BMPR1AP36894 532 aa21.29■■□□□ 1
CCDC88B-206ENST00000473405 TIGD5Q53EQ6 642 aa21.29■■□□□ 1
CCDC88B-206ENST00000473405 TRIM22Q8IYM9 498 aa21.29■■□□□ 1
CCDC88B-206ENST00000473405 ZNF274Q96GC6 653 aaPredicted RBP21.29■■□□□ 1
CCDC88B-206ENST00000473405 PLXNA4Q9HCM2 1894 aa21.28■■□□□ 1
CCDC88B-206ENST00000473405 M0R2N6 131 aa21.28■■□□□ 1
CCDC88B-206ENST00000473405 PSAPP07602 524 aa21.28■■□□□ 1
CCDC88B-206ENST00000473405 BTG3Q14201 252 aaPredicted RBP21.28■■□□□ 1
CCDC88B-206ENST00000473405 NPY5RQ15761 445 aa21.28■■□□□ 1
CCDC88B-206ENST00000473405 NPAS4Q8IUM7 802 aa21.28■■□□□ 1
CCDC88B-206ENST00000473405 CKAP2LQ8IYA6 745 aa21.28■■□□□ 1
CCDC88B-206ENST00000473405 BANK1Q8NDB2 785 aa21.28■■□□□ 1
CCDC88B-206ENST00000473405 ERVK-5Q9HDB9 667 aa21.28■■□□□ 1
CCDC88B-206ENST00000473405 GABBR1Q9UBS5 961 aa21.28■■□□□ 1
CCDC88B-206ENST00000473405 RWDD3Q9Y3V2 267 aa21.28■■□□□ 1
CCDC88B-206ENST00000473405 MGEA5O60502 916 aa21.27■■□□□ 1
CCDC88B-206ENST00000473405 DEXIO95424 95 aa21.27■■□□□ 1
CCDC88B-206ENST00000473405 KCNA5P22460 613 aa21.27■■□□□ 1
CCDC88B-206ENST00000473405 USP11P51784 963 aa21.27■■□□□ 1
CCDC88B-206ENST00000473405 NLRP5P59047 1200 aa21.27■■□□□ 1
CCDC88B-206ENST00000473405 SSRP1Q08945 709 aaKnown RBP21.27■■□□□ 1
CCDC88B-206ENST00000473405 COL19A1Q14993 1142 aa21.27■■□□□ 1
CCDC88B-206ENST00000473405 SLC5A5Q92911 643 aa21.27■■□□□ 1
CCDC88B-206ENST00000473405 AIFM3Q96NN9 605 aa21.27■■□□□ 1
CCDC88B-206ENST00000473405 C11orf84Q9BUA3 381 aaPredicted RBP21.27■■□□□ 1
CCDC88B-206ENST00000473405 TCEAL9Q9UHQ7 104 aa21.27■■□□□ 1
CCDC88B-206ENST00000473405 PCDHA4Q9UN74 947 aa21.27■■□□□ 1
CCDC88B-206ENST00000473405 GINS2Q9Y248 185 aa21.27■■□□□ 1
CCDC88B-206ENST00000473405 NOC2LQ9Y3T9 749 aaKnown RBP21.27■■□□□ 1
CCDC88B-206ENST00000473405 WDR64B1ANS9 1081 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 GRM6O15303 877 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 ZNF862O60290 1169 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 RB1P06400 928 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 STK3Q13188 491 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 UGCGQ16739 394 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 KIZQ2M2Z5 673 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 LEXMQ3ZCV2 418 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 TCEAL5Q5H9L2 206 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 TRMT1LQ7Z2T5 733 aaKnown RBP21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 CMTR2Q8IYT2 770 aaKnown RBP21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 TBCKQ8TEA7 893 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 GJA10Q969M2 543 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 PPP1R16BQ96T49 567 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 NSUN3Q9H649 340 aaKnown RBP21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 SAMM50Q9Y512 469 aa21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 MRPL42Q9Y6G3 142 aaKnown RBP21.26■□□□□ 0.99
CCDC88B-206ENST00000473405 CPLX1O14810 134 aa21.25■□□□□ 0.99
CCDC88B-206ENST00000473405 GPR32O75388 356 aa21.25■□□□□ 0.99
CCDC88B-206ENST00000473405 LINC01465Q8N7H1 131 aa21.25■□□□□ 0.99
CCDC88B-206ENST00000473405 DAGLBQ8NCG7 672 aa21.25■□□□□ 0.99
CCDC88B-206ENST00000473405 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.25■□□□□ 0.99
CCDC88B-206ENST00000473405 RIT2Q99578 217 aa21.25■□□□□ 0.99
CCDC88B-206ENST00000473405 OSMRQ99650 979 aa21.25■□□□□ 0.99
CCDC88B-206ENST00000473405 DISC1Q9NRI5 854 aa21.25■□□□□ 0.99
CCDC88B-206ENST00000473405 PDRG1Q9NUG6 133 aa21.25■□□□□ 0.99
CCDC88B-206ENST00000473405 GAS7O60861 476 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 RPS6KA5O75582 802 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 TDP2O95551 362 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 VTNP04004 478 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 NEFLP07196 543 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 GATMP50440 423 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 CLCN3P51790 818 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 PRKCEQ02156 737 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 NFX1Q12986 1120 aaKnown RBP21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 Q4G0T1 1027 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 LRCH2Q5VUJ6 765 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 BLIDQ8IZY5 108 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 NEK9Q8TD19 979 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 FAM167AQ96KS9 214 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 LMAN2LQ9H0V9 348 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 UNC45AQ9H3U1 944 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 CEP131Q9UPN4 1083 aa21.24■□□□□ 0.99
CCDC88B-206ENST00000473405 CYP3A7-CYP3A51PA0A087WV96 503 aa21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 CHMP2AO43633 222 aa21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 PSMD10O75832 226 aa21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 OATP04181 439 aa21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 STAG3L1P0CL83 205 aa21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 CYP3A7P24462 503 aa21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 SARSP49591 514 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 CRYBB1P53674 252 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 PAN2Q504Q3 1202 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 FAM228AQ86W67 206 aa21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 FAM177A1Q8N128 213 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 METTL13Q8N6R0 699 aa21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 PABPC5Q96DU9 382 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 MBOAT7Q96N66 472 aa21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 PLVAPQ9BX97 442 aa21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 ST3GAL5Q9UNP4 418 aa21.23■□□□□ 0.99
CCDC88B-206ENST00000473405 MMP1P03956 469 aa21.22■□□□□ 0.99
CCDC88B-206ENST00000473405 SFNP31947 248 aa21.22■□□□□ 0.99
CCDC88B-206ENST00000473405 JAK3P52333 1124 aa21.22■□□□□ 0.99
CCDC88B-206ENST00000473405 SCRN1Q12765 414 aa21.22■□□□□ 0.99
CCDC88B-206ENST00000473405 CAMK1Q14012 370 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms