RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NOX5Q96PH1 765 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 GBP3Q9H0R5 595 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 CSDE1O75534 798 aaKnown RBP15.03■□□□□ -0
CCDC88A-211ENST00000471947 RPA1P27694 616 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 SPDYE2Q495Y8 402 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 VPS36Q86VN1 386 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 EHD4Q9H223 541 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 UBE2TQ9NPD8 197 aaPredicted RBP15.03■□□□□ -0
CCDC88A-211ENST00000471947 WRAP73Q9P2S5 460 aaPredicted RBP15.03■□□□□ -0
CCDC88A-211ENST00000471947 TELO2Q9Y4R8 837 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 ZSCAN20P17040 1043 aaPredicted RBP15.02■□□□□ -0
CCDC88A-211ENST00000471947 ITGB5P18084 799 aa15.02■□□□□ -0
CCDC88A-211ENST00000471947 VCAM1P19320 739 aa15.02■□□□□ -0
CCDC88A-211ENST00000471947 ZNF211Q13398 564 aaPredicted RBP15.02■□□□□ -0
CCDC88A-211ENST00000471947 GBP6Q6ZN66 633 aa15.02■□□□□ -0
CCDC88A-211ENST00000471947 DAAM2Q86T65 1068 aa15.02■□□□□ -0
CCDC88A-211ENST00000471947 GLG1Q92896 1179 aa15.02■□□□□ -0
CCDC88A-211ENST00000471947 MAGEF1Q9HAY2 307 aa15.02■□□□□ -0
CCDC88A-211ENST00000471947 CENPFP49454 3210 aa15.02■□□□□ -0
CCDC88A-211ENST00000471947 HNRNPDLO14979 420 aaKnown RBP15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 TNFAIP3P21580 790 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 KLRC1P26715 233 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 ARHGAP25P42331 645 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 ZNF394Q53GI3 561 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 KCTD16Q68DU8 428 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 TATDN1Q6P1N9 297 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 TAB3Q8N5C8 712 aaPredicted RBP15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 TRPM4Q8TD43 1214 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 POMGNT1Q8WZA1 660 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 NACC1Q96RE7 527 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 CBWD1Q9BRT8 395 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 PI4K2AQ9BTU6 479 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 ATMINO43313 823 aaPredicted RBP15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 TNNI1P19237 187 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 SREBF1P36956 1147 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 TMEM143Q96AN5 459 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 KRT12Q99456 494 aa15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 LARSQ9P2J5 1176 aaKnown RBP15.02□□□□□ -0.01
CCDC88A-211ENST00000471947 SMCHD1A6NHR9 2005 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 OPLAHO14841 1288 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 ZNF263O14978 683 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 MYL1P05976 194 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 PBX1P40424 430 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 ZBTB33Q86T24 672 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 GPR161Q8N6U8 529 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 ZNF507Q8TCN5 953 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 L2HGDHQ9H9P8 463 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 PLCB1Q9NQ66 1216 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 ZSCAN5CA6NGD5 496 aaPredicted RBP15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 VAV2P52735 878 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 METTL13Q8N6R0 699 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 HDAC7Q8WUI4 952 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 FAM20AQ96MK3 541 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 NAP1L4Q99733 375 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 DPH5Q9H2P9 285 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 ALKBH5Q6P6C2 394 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 ELP3Q9H9T3 547 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 TOPORSQ9NS56 1045 aaPredicted RBP15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 CTTNBP2NLQ9P2B4 639 aa15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 DDX41Q9UJV9 622 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-211ENST00000471947 STAT1P42224 750 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 VPS41P49754 854 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 IRX3P78415 501 aaPredicted RBP15□□□□□ -0.01
CCDC88A-211ENST00000471947 PTK2Q05397 1052 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 KCNMA1Q12791 1236 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 CC2D1AQ6P1N0 951 aaPredicted RBP15□□□□□ -0.01
CCDC88A-211ENST00000471947 MAATS1Q7Z4T9 603 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 DNAJC12Q9UKB3 198 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 CHD4Q14839 1912 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 VIL1P09327 827 aaKnown RBP15□□□□□ -0.01
CCDC88A-211ENST00000471947 SRGAP2CP0DJJ0 459 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 CNTN2Q02246 1040 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 C8orf74Q6P047 294 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 LRRC55Q6ZSA7 311 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 STXBP4Q6ZWJ1 553 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 OTOP1Q7RTM1 612 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 MTMR8Q96EF0 704 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 RNF181Q9P0P0 153 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 RGS17Q9UGC6 210 aaPredicted RBP15□□□□□ -0.01
CCDC88A-211ENST00000471947 RGL2O15211 777 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 PGK2P07205 417 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 GUCY2DQ02846 1103 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 TMEM119Q4V9L6 283 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 PDXDC1Q6P996 788 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 ELOA2Q8IYF1 753 aaPredicted RBP15□□□□□ -0.01
CCDC88A-211ENST00000471947 ETNPPLQ8TBG4 499 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 ZBTB10Q96DT7 871 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 GMCL1Q96IK5 515 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 KCNMB3Q9NPA1 279 aa15□□□□□ -0.01
CCDC88A-211ENST00000471947 SLC12A3P55017 1021 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 EHBP1Q8NDI1 1231 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 KAT5Q92993 513 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 CCDC113Q9H0I3 377 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 FEM1BQ9UK73 627 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 USTQ9Y2C2 406 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 LRRC10BA6NIK2 292 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 RASSF10A6NK89 507 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 ADM5C9JUS6 153 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 PDE2AO00408 941 aaPredicted RBP14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 SASH3O75995 380 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms