RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 SETDB1Q15047 1291 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 ZNF174Q15697 407 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 DDB1Q16531 1140 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 MEA1Q16626 185 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 CNPY1Q3B7I2 92 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 CFAP157Q5JU67 520 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 FOXB2Q5VYV0 432 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 DENND2CQ68D51 928 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 ZNF662Q6ZS27 426 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 TTC8Q8TAM2 541 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 SPATA20Q8TB22 786 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 LPIN2Q92539 896 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 TANGO6Q9C0B7 1094 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 NLRC4Q9NPP4 1024 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 ETNK2Q9NVF9 386 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 NMRK1Q9NWW6 199 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 ARHGAP20Q9P2F6 1191 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 DENND2AQ9ULE3 1009 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 ARHGEF28Q8N1W1 1705 aaKnown RBP4.58□□□□□ -1.68
VPS50-210ENST00000471188 WDR17Q8IZU2 1322 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 SH3TC1Q8TE82 1336 aa4.58□□□□□ -1.68
VPS50-210ENST00000471188 NPHP3-ACAD11A0A0J9YXS1 232 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 MAGEA13PA6NCF6 341 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 PALM3A6NDB9 673 aaPredicted RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 CCDC169A6NNP5 214 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 B4E1Z4 1266 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 F8VZ95 297 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 KRIT1O00522 736 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 PSMA7O14818 248 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 KCNQ3O43525 872 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 OPHN1O60890 802 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 PEX11AO75192 247 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 GNA14O95837 355 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ERFP50548 548 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 CCNG1P51959 295 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ANTXR2P58335 489 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 GUCA2AQ02747 115 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ADCY1Q08828 1119 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 CCDC15Q0P6D6 951 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 NEXNQ0ZGT2 675 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 RPS6KA1Q15418 735 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 PABPC1LQ4VXU2 614 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 ZC2HC1CQ53FD0 456 aaPredicted RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 SLC44A4Q53GD3 710 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 TMEM67Q5HYA8 995 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 APOA5Q6Q788 366 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 HS2ST1Q7LGA3 356 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 DAAM2Q86T65 1068 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ARHGAP18Q8N392 663 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 STAG2Q8N3U4 1231 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 FAM133AQ8N9E0 248 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 WASF1Q92558 559 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 NUDT16Q96DE0 195 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 IQCDQ96DY2 449 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 FMO2Q99518 471 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 PLIN2Q99541 437 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 GOLPH3Q9H4A6 298 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 LUC7LQ9NQ29 371 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.57□□□□□ -1.68
VPS50-210ENST00000471188 STRN4Q9NRL3 753 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 TXLNGQ9NUQ3 528 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 RMND1Q9NWS8 449 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 HAO1Q9UJM8 370 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 SLC27A5Q9Y2P5 690 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ARL2BPQ9Y2Y0 163 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 UTP11Q9Y3A2 253 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 DAAM1Q9Y4D1 1078 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 SLC12A7Q9Y666 1083 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 MYH1P12882 1939 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 TMEM110-MUSTN1A8MSY1 372 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 RNF113AO15541 343 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 TTI1O43156 1089 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 TJP3O95049 919 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 RAPGEF3O95398 923 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 MMP1P03956 469 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 RPN1P04843 607 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 GNAZP19086 355 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 GNAT2P19087 354 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 EEF1GP26641 437 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 ALDH1B1P30837 517 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 GUCY1A2P33402 732 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 VHLP40337 213 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 PMS1P54277 932 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 INHBCP55103 352 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 EIF3BP55884 814 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 ZNF658Q5TYW1 1059 aaPredicted RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 SNX30Q5VWJ9 437 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 KSR2Q6VAB6 950 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 CCDC80Q76M96 950 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 PTF1AQ7RTS3 328 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 NANOGNBQ7Z5D8 188 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 TMC3Q7Z5M5 1100 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ADAT2Q7Z6V5 191 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.57□□□□□ -1.68
VPS50-210ENST00000471188 USP38Q8NB14 1042 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ZC3H15Q8WU90 426 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 WDR60Q8WVS4 1066 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ATXN2LQ8WWM7 1075 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 SCG3Q8WXD2 468 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 CENPTQ96BT3 561 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms