RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 CD97P48960 835 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 GNAQP50148 359 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 C21orf58P58505 322 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 ST5P78524 1137 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 PLIN5Q00G26 463 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 APBA1Q02410 837 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 MRPL58Q14197 206 aaKnown RBP5.6□□□□□ -1.51
COL3A1-205ENST00000470167 SLC14A2Q15849 920 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 FBXW10Q5XX13 1052 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 NEK5Q6P3R8 708 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 MZT2AQ6P582 158 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 FBXO38Q6PIJ6 1188 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 TMCO3Q6UWJ1 677 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 CWC27Q6UX04 472 aaKnown RBP5.6□□□□□ -1.51
COL3A1-205ENST00000470167 ANGPTL8Q6UXH0 198 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 FAM196AQ6ZSG2 479 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 CCDC121Q6ZUS5 278 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 BTN2A1Q7KYR7 527 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 NLRP14Q86W24 1093 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 METTL16Q86W50 562 aaKnown RBP5.6□□□□□ -1.51
COL3A1-205ENST00000470167 SMC1BQ8NDV3 1235 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 TOR1AIP2Q8NFQ8 470 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 OR52K2Q8NGK3 314 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 ATXN2LQ8WWM7 1075 aaKnown RBP5.6□□□□□ -1.51
COL3A1-205ENST00000470167 LPIN2Q92539 896 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 FATE1Q969F0 183 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 ATP6V1E2Q96A05 226 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 ABHD8Q96I13 439 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 HIC2Q96JB3 615 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 MAELQ96JY0 434 aaKnown RBP5.6□□□□□ -1.51
COL3A1-205ENST00000470167 RPGRIP1Q96KN7 1286 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 SIN3AQ96ST3 1273 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 SPZ1Q9BXG8 430 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 CFHR5Q9BXR6 569 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 FOXP3Q9BZS1 431 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 CRISPLD1Q9H336 500 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 C12orf10Q9HB07 376 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 SLC39A2Q9NP94 309 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 MRGBPQ9NV56 204 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 GALNT8Q9NY28 637 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 AATFQ9NY61 560 aaKnown RBP eCLIP5.6□□□□□ -1.51
COL3A1-205ENST00000470167 MIS18AQ9NYP9 233 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 FOXD3Q9UJU5 478 aaPredicted RBP5.6□□□□□ -1.51
COL3A1-205ENST00000470167 STRIP2Q9ULQ0 834 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 DUSP12Q9UNI6 340 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 CFL2Q9Y281 166 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 R3HDM2Q9Y2K5 976 aaKnown RBP5.6□□□□□ -1.51
COL3A1-205ENST00000470167 DYRK1BQ9Y463 629 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 KCNMB2Q9Y691 235 aa5.6□□□□□ -1.51
COL3A1-205ENST00000470167 SOGA1O94964 1423 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 SETD1BQ9UPS6 1966 aaKnown RBP5.59□□□□□ -1.51
COL3A1-205ENST00000470167 TRAV6A0A075B6T7 132 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 SENP3-EIF4A1A0A087X0R7 540 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 INO80B-WBP1J3KQ70 363 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 EIF1AYO14602 144 aaKnown RBP5.59□□□□□ -1.51
COL3A1-205ENST00000470167 CETN3O15182 167 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 GFRA3O60609 400 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 FSBPO95073 299 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 RPLP1P05386 114 aaKnown RBP5.59□□□□□ -1.51
COL3A1-205ENST00000470167 GLI1P08151 1106 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 EZRP15311 586 aaKnown RBP5.59□□□□□ -1.51
COL3A1-205ENST00000470167 EPB42P16452 691 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 ZKSCAN1P17029 563 aaPredicted RBP5.59□□□□□ -1.51
COL3A1-205ENST00000470167 ZNF3P17036 446 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 TNFAIP3P21580 790 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 IL10P22301 178 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 ETFBP38117 255 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 MAPKAPK2P49137 400 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 ETV1P50549 477 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 TMF1P82094 1093 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 NIPAL4Q0D2K0 466 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 AP1B1Q10567 949 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 NAA25Q14CX7 972 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 RAB3GAP1Q15042 981 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 PLCB4Q15147 1175 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.59□□□□□ -1.51
COL3A1-205ENST00000470167 SUPT20HL1Q3ZLR7 823 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 MTERF2Q49AM1 385 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 FBXO43Q4G163 708 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 VWA3BQ502W6 1294 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 CEP78Q5JTW2 689 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 FAM209AQ5JX71 171 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 OTUD7BQ6GQQ9 843 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 PDE12Q6L8Q7 609 aaKnown RBP5.59□□□□□ -1.51
COL3A1-205ENST00000470167 SLC2A7Q6PXP3 512 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 PI16Q6UXB8 463 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 PPP1R21Q6ZMI0 780 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 C3orf62Q6ZUJ4 267 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 ZNF438Q7Z4V0 828 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 NKAIN4Q8IVV8 208 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 CRIPAKQ8N1N5 446 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 STON2Q8WXE9 905 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 JPH3Q8WXH2 748 aaPredicted RBP5.59□□□□□ -1.51
COL3A1-205ENST00000470167 PEX13Q92968 403 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 NXPE3Q969Y0 559 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 GMCL1Q96IK5 515 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 VPS50Q96JG6 964 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 TSC22D3Q99576 134 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 LPIN3Q9BQK8 851 aa5.59□□□□□ -1.51
COL3A1-205ENST00000470167 ISCA1Q9BUE6 129 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms