RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 ENPEPQ07075 957 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 NCBP1Q09161 790 aaKnown RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 KCNMA1Q12791 1236 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 PPP2R5AQ15172 486 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 ASTE1Q2TB18 679 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 ARHGEF16Q5VV41 709 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 HS2ST1Q7LGA3 356 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 FMNL3Q8IVF7 1028 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 FAM178BQ8IXR5 827 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 CPXCR1Q8N123 301 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 ZNF710Q8N1W2 664 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 PROCA1Q8NCQ7 364 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 ZKSCAN4Q969J2 545 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 HVCN1Q96D96 273 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 PURBQ96QR8 312 aaKnown RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 WDR24Q96S15 920 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 CHP1Q99653 195 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 DESI2Q9BSY9 194 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 FGFBP2Q9BYJ0 223 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 TMEM206Q9H813 350 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 ACAD9Q9H845 621 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 NHEJ1Q9H9Q4 299 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 AIPL1Q9NZN9 384 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 LARSQ9P2J5 1176 aaKnown RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 FBXO40Q9UH90 709 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 ZNF215Q9UL58 517 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 REXO2Q9Y3B8 237 aaKnown RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 MRFAP1Q9Y605 127 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 BZW2Q9Y6E2 419 aaKnown RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 LOC285556D6RIA3 1793 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 PAPPA2Q9BXP8 1791 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 ASTN1O14525 1302 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 LOC102724159A0A0B4J2E5 919 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 CXCL11O14625 94 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 IRF6O14896 467 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PMM2O15305 246 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PJA2O43164 708 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 KRT86O43790 486 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PPP1R12BO60237 982 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 NOL4O94818 638 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 GCNT3O95395 438 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 AFPP02771 609 aaKnown RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 NR3C2P08235 984 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 MYBP10242 640 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 EPB41P11171 864 aaKnown RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 XRCC5P13010 732 aaKnown RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 COPB2P35606 906 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PSMC2P35998 433 aaKnown RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 EPS15P42566 896 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 HMGCS2P54868 508 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PPATQ06203 517 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 KCNH2Q12809 1159 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 MAPK7Q13164 816 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 BAATQ14032 418 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 TMEM132BQ14DG7 1078 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PWP2Q15269 919 aaKnown RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 C10orf76Q5T2E6 689 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 SNRNP48Q6IEG0 339 aaKnown RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 DPY19L2P1Q6NXN4 242 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PDXDC1Q6P996 788 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PADI6Q6TGC4 694 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 SLC30A10Q6XR72 485 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 USP50Q70EL3 339 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 NELFCDQ8IXH7 590 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 MYCT1Q8N699 235 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 IL31RAQ8NI17 732 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PIGOQ8TEQ8 1089 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 VTI1AQ96AJ9 217 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 L3MBTL3Q96JM7 780 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 CCDC42Q96M95 316 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 DRC1Q96MC2 740 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PCMTD1Q96MG8 357 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 NTPCRQ9BSD7 190 aaKnown RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 GBP3Q9H0R5 595 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 TSPYL2Q9H2G4 693 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 MMRN2Q9H8L6 949 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 CYP39A1Q9NYL5 469 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 TBC1D7Q9P0N9 293 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 WRAP73Q9P2S5 460 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-208ENST00000468792 TCEAL9Q9UHQ7 104 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 CDC23Q9UJX2 597 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PCDHA10Q9Y5I2 948 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 SNCAIPQ9Y6H5 919 aa8.37□□□□□ -1.07
COL6A3-208ENST00000468792 PFASO15067 1338 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 ANO9A1A5B4 782 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 CTAGE9A4FU28 777 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 SPDYE16A6NNV3 312 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 RSPH10B2B2RC85 870 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 SPATA31C2B4DYI2 1134 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 NKRFO15226 690 aaKnown RBP eCLIP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 P4HA2O15460 535 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 CHMP2AO43633 222 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 USO1O60763 962 aaKnown RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 TADA3O75528 432 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 EIF3JO75822 258 aaKnown RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 AKAP3O75969 853 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 URI1O94763 535 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 GFPT2O94808 682 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 PRPF6O94906 941 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms