RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 CLIC4Q9Y696 253 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 SUN1O94901 812 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 GUCY2DQ02846 1103 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 TNFAIP2Q03169 654 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 ART3Q13508 389 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 TTC19Q6DKK2 380 aaPredicted RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 PCGF5Q86SE9 256 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 YAF2Q8IY57 180 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 GIMAP8Q8ND71 665 aaPredicted RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 TBCKQ8TEA7 893 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 SLC16A10Q8TF71 515 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 DHTKD1Q96HY7 919 aaPredicted RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 CRAMP1Q96RY5 1269 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 TUBGCP2Q9BSJ2 902 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 SUDS3Q9H7L9 328 aaPredicted RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 CD209Q9NNX6 404 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 PIH1D3Q9NQM4 214 aaKnown RBP9.37□□□□□ -0.91
HPS4-209ENST00000466781 CAPN7Q9Y6W3 813 aa9.37□□□□□ -0.91
HPS4-209ENST00000466781 PNPLA6Q8IY17 1366 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 EFCAB8A8MWE9 144 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 BTBD18B2RXH4 712 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 TAF11Q15544 211 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 SLFN12LQ6IEE8 588 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 SNX2O60749 519 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 PAPOLAP51003 745 aaKnown RBP9.36□□□□□ -0.91
HPS4-209ENST00000466781 CDC37Q16543 378 aaPredicted RBP9.36□□□□□ -0.91
HPS4-209ENST00000466781 GLE1Q53GS7 698 aaKnown RBP9.36□□□□□ -0.91
HPS4-209ENST00000466781 RASGRP4Q8TDF6 673 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 LZICQ8WZA0 190 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 TEX12Q9BXU0 123 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 FOXP1Q9H334 677 aaPredicted RBP9.36□□□□□ -0.91
HPS4-209ENST00000466781 JRKLQ9Y4A0 524 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 CD163L1Q9NR16 1453 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 ZBED1O96006 694 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 MT-ND3P03897 115 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 RNF207Q6ZRF8 634 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 P2RX5Q93086 422 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 USP28Q96RU2 1077 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 TDRD3Q9H7E2 651 aaKnown RBP9.36□□□□□ -0.91
HPS4-209ENST00000466781 PARVGQ9HBI0 331 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 FARP1Q9Y4F1 1045 aaPredicted RBP9.36□□□□□ -0.91
HPS4-209ENST00000466781 PHLPP2Q6ZVD8 1323 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 USP17L5A8MUK1 530 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 GNL1P36915 607 aaPredicted RBP9.36□□□□□ -0.91
HPS4-209ENST00000466781 FOXD4Q12950 439 aaPredicted RBP9.36□□□□□ -0.91
HPS4-209ENST00000466781 NFX1Q12986 1120 aaKnown RBP9.36□□□□□ -0.91
HPS4-209ENST00000466781 KIF19Q2TAC6 998 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 ZNF467Q7Z7K2 595 aaPredicted RBP9.36□□□□□ -0.91
HPS4-209ENST00000466781 C17orf53Q8N3J3 647 aaPredicted RBP9.36□□□□□ -0.91
HPS4-209ENST00000466781 BANK1Q8NDB2 785 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 CEP19Q96LK0 163 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 SUGT1Q9Y2Z0 365 aa9.36□□□□□ -0.91
HPS4-209ENST00000466781 PTPN12Q05209 780 aaKnown RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 SCRN1Q12765 414 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 CDO1Q16878 200 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 CELF1Q92879 486 aaKnown RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 ZNRF3Q9ULT6 936 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 GFPT2O94808 682 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 LRRC41Q15345 812 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 ZWILCHQ9H900 591 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 INTS9Q9NV88 658 aaKnown RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 CNTNAP4Q9C0A0 1308 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 LUC7L3O95232 432 aaKnown RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 LDHAP00338 332 aaKnown RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 DPEP1P16444 411 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 CDK8P49336 464 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 TAF1BQ53T94 588 aaPredicted RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 MICALL2Q8IY33 904 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 ZC3H15Q8WU90 426 aaKnown RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 RNF26Q9BY78 433 aaPredicted RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 DAAM1Q9Y4D1 1078 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 EPN1Q9Y6I3 576 aaPredicted RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 KIAA1210Q9ULL0 1709 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 PPP6R2O75170 966 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 OCM2P0CE71 109 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 OCMP0CE72 109 aaPredicted RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 HSPA6P17066 643 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 NDUFA8P51970 172 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 JAK3P52333 1124 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 RASGRF1Q13972 1273 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 MAN2A1Q16706 1144 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 ADCK5Q3MIX3 580 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 TMEM179Q6ZVK1 233 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 AFG1LQ8WV93 481 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 LSG1Q9H089 658 aaKnown RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 ZHX2Q9Y6X8 837 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 HSP90AA5PQ58FG0 334 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 ZNF658Q5TYW1 1059 aaPredicted RBP9.35□□□□□ -0.91
HPS4-209ENST00000466781 MFSD14CQ5VZR4 134 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 CYP4F22Q6NT55 531 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 FANCLQ9NW38 375 aa9.35□□□□□ -0.91
HPS4-209ENST00000466781 H3BRJ5 948 aa9.34□□□□□ -0.91
HPS4-209ENST00000466781 ASNSP08243 561 aa9.34□□□□□ -0.91
HPS4-209ENST00000466781 PLS3P13797 630 aa9.34□□□□□ -0.91
HPS4-209ENST00000466781 PSMA2P25787 234 aa9.34□□□□□ -0.91
HPS4-209ENST00000466781 SEPT2Q15019 361 aa9.34□□□□□ -0.91
HPS4-209ENST00000466781 TRIM59Q8IWR1 403 aa9.34□□□□□ -0.91
HPS4-209ENST00000466781 SCN4BQ8IWT1 228 aa9.34□□□□□ -0.91
HPS4-209ENST00000466781 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.34□□□□□ -0.91
HPS4-209ENST00000466781 DCAF4Q8WV16 495 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms