RNA–Protein interactions for RNA: ENST00000465560.5

PTCD3-206, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 747 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-206ENST00000465560 CHRDL2Q6WN34 429 aa22.73■■□□□ 1.23
PTCD3-206ENST00000465560 LRRC8DQ7L1W4 858 aa22.73■■□□□ 1.23
PTCD3-206ENST00000465560 SCLYQ96I15 445 aa22.73■■□□□ 1.23
PTCD3-206ENST00000465560 USP28Q96RU2 1077 aa22.73■■□□□ 1.23
PTCD3-206ENST00000465560 STK24Q9Y6E0 443 aa22.73■■□□□ 1.23
PTCD3-206ENST00000465560 SMIM35A0A1B0GVV1 85 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 VWA3AA6NCI4 1184 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 MAGEB2O15479 319 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 MED24O75448 989 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 BRD1O95696 1058 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 CSF2RAP15509 400 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 RPA1P27694 616 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 MTERF2Q49AM1 385 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 ZNF618Q5T7W0 954 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 TRAF7Q6Q0C0 670 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 RSPH3Q86UC2 560 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 CATSPER3Q86XQ3 398 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 CEP89Q96ST8 783 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 PRO3102Q9H379 93 aa22.72■■□□□ 1.23
PTCD3-206ENST00000465560 TCHHQ07283 1943 aa22.71■■□□□ 1.23
PTCD3-206ENST00000465560 PARNO95453 639 aaKnown RBP22.71■■□□□ 1.23
PTCD3-206ENST00000465560 RFC2P35250 354 aa22.71■■□□□ 1.23
PTCD3-206ENST00000465560 PLA2G4FQ68DD2 849 aa22.71■■□□□ 1.23
PTCD3-206ENST00000465560 OTUD6AQ7L8S5 288 aa22.71■■□□□ 1.23
PTCD3-206ENST00000465560 DNAJB3Q8WWF6 145 aa22.71■■□□□ 1.23
PTCD3-206ENST00000465560 ZNF396Q96N95 335 aaPredicted RBP22.71■■□□□ 1.23
PTCD3-206ENST00000465560 CYP26B1Q9NR63 512 aa22.71■■□□□ 1.23
PTCD3-206ENST00000465560 PPME1Q9Y570 386 aa22.71■■□□□ 1.23
PTCD3-206ENST00000465560 MORC2Q9Y6X9 1032 aaPredicted RBP22.71■■□□□ 1.23
PTCD3-206ENST00000465560 MUTP22033 750 aa22.7■■□□□ 1.22
PTCD3-206ENST00000465560 ANP32AP39687 249 aaKnown RBP22.7■■□□□ 1.22
PTCD3-206ENST00000465560 NASPP49321 788 aaPredicted RBP22.7■■□□□ 1.22
PTCD3-206ENST00000465560 CEBPZQ03701 1054 aaKnown RBP22.7■■□□□ 1.22
PTCD3-206ENST00000465560 TBC1D8BQ0IIM8 1120 aa22.7■■□□□ 1.22
PTCD3-206ENST00000465560 SNX29Q8TEQ0 813 aa22.7■■□□□ 1.22
PTCD3-206ENST00000465560 SH2D3AQ9BRG2 576 aa22.7■■□□□ 1.22
PTCD3-206ENST00000465560 UBE2OQ9C0C9 1292 aaKnown RBP22.7■■□□□ 1.22
PTCD3-206ENST00000465560 FAM49AQ9H0Q0 323 aaPredicted RBP22.7■■□□□ 1.22
PTCD3-206ENST00000465560 IL23AQ9NPF7 189 aa22.7■■□□□ 1.22
PTCD3-206ENST00000465560 ZDHHC9Q9Y397 364 aa22.7■■□□□ 1.22
PTCD3-206ENST00000465560 PP2D1A8MPX8 630 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 RSPH10B2B2RC85 870 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 CTSHP09668 335 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 RSPH10BP0C881 870 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 CCT6AP40227 531 aaKnown RBP22.69■■□□□ 1.22
PTCD3-206ENST00000465560 EPHB4P54760 987 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 NPEPPSP55786 919 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 FAM26DQ5JW98 314 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 KRT79Q5XKE5 535 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 LINC01465Q8N7H1 131 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 CEP170P1Q96L14 293 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 AK8Q96MA6 479 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 ANKEF1Q9NU02 776 aa22.69■■□□□ 1.22
PTCD3-206ENST00000465560 ZBTB39O15060 712 aa22.68■■□□□ 1.22
PTCD3-206ENST00000465560 PFKMP08237 780 aa22.68■■□□□ 1.22
PTCD3-206ENST00000465560 XRCC6P12956 609 aaKnown RBP eCLIP22.68■■□□□ 1.221e-7■□□□□ 10
PTCD3-206ENST00000465560 MGAT3Q09327 533 aa22.68■■□□□ 1.22
PTCD3-206ENST00000465560 SLC39A14Q15043 492 aa22.68■■□□□ 1.22
PTCD3-206ENST00000465560 EFCAB12Q6NXP0 572 aa22.68■■□□□ 1.22
PTCD3-206ENST00000465560 POTEGQ6S5H5 508 aa22.68■■□□□ 1.22
PTCD3-206ENST00000465560 RPUSD2Q8IZ73 545 aaKnown RBP22.68■■□□□ 1.22
PTCD3-206ENST00000465560 KIAA0319LQ8IZA0 1049 aa22.68■■□□□ 1.22
PTCD3-206ENST00000465560 NME8Q8N427 588 aa22.68■■□□□ 1.22
PTCD3-206ENST00000465560 METTL13Q8N6R0 699 aa22.68■■□□□ 1.22
PTCD3-206ENST00000465560 VWCEQ96DN2 955 aa22.68■■□□□ 1.22
PTCD3-206ENST00000465560 MMTAG2Q9BU76 263 aaKnown RBP22.68■■□□□ 1.22
PTCD3-206ENST00000465560 IGKV6-21A0A0C4DH24 114 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 MAFO75444 373 aaPredicted RBP22.67■■□□□ 1.22
PTCD3-206ENST00000465560 TMOD1P28289 359 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 MARCKSP29966 332 aaPredicted RBP22.67■■□□□ 1.22
PTCD3-206ENST00000465560 CDC25AP30304 524 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 DDIT3P35638 169 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 LONP1P36776 959 aaKnown RBP22.67■■□□□ 1.22
PTCD3-206ENST00000465560 MRPS6P82932 125 aaKnown RBP22.67■■□□□ 1.22
PTCD3-206ENST00000465560 MBTPS1Q14703 1052 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 GPNMBQ14956 572 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 ECM1Q16610 540 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 XKR9Q5GH70 373 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 IER5Q5VY09 327 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 ATL3Q6DD88 541 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 LRRC71Q8N4P6 559 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 ZNF579Q8NAF0 562 aaKnown RBP22.67■■□□□ 1.22
PTCD3-206ENST00000465560 PIGOQ8TEQ8 1089 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 NACC1Q96RE7 527 aa22.67■■□□□ 1.22
PTCD3-206ENST00000465560 JPH2Q9BR39 696 aaPredicted RBP22.67■■□□□ 1.22
PTCD3-206ENST00000465560 FBXO2Q9UK22 296 aaPredicted RBP22.67■■□□□ 1.22
PTCD3-206ENST00000465560 COLQQ9Y215 455 aaPredicted RBP22.67■■□□□ 1.22
PTCD3-206ENST00000465560 NBNO60934 754 aa22.66■■□□□ 1.22
PTCD3-206ENST00000465560 YEATS4O95619 227 aa22.66■■□□□ 1.22
PTCD3-206ENST00000465560 CHRNA1P02708 482 aa22.66■■□□□ 1.22
PTCD3-206ENST00000465560 CXCL10P02778 98 aa22.66■■□□□ 1.22
PTCD3-206ENST00000465560 ACRP10323 421 aa22.66■■□□□ 1.22
PTCD3-206ENST00000465560 RFC5P40937 340 aa22.66■■□□□ 1.22
PTCD3-206ENST00000465560 RARRES1P49788 294 aa22.66■■□□□ 1.22
PTCD3-206ENST00000465560 CLCN3P51790 818 aa22.66■■□□□ 1.22
PTCD3-206ENST00000465560 GRIN1Q05586 938 aa22.66■■□□□ 1.22
PTCD3-206ENST00000465560 FOXD4L6Q3SYB3 417 aaPredicted RBP22.66■■□□□ 1.22
PTCD3-206ENST00000465560 PSRC1Q6PGN9 363 aaPredicted RBP22.66■■□□□ 1.22
PTCD3-206ENST00000465560 FOXD4L3Q6VB84 417 aaPredicted RBP22.66■■□□□ 1.22
PTCD3-206ENST00000465560 C16orf59Q7L2K0 433 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms