RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 PAGE5Q96GU1 130 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 NT5C3AQ9H0P0 336 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 RMND1Q9NWS8 449 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 PCDHA5Q9Y5H7 936 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 PRUNE2Q8WUY3 3088 aa13.18□□□□□ -0.3
USP54-209ENST00000464635 KDM3AQ9Y4C1 1321 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 MYO9BQ13459 2157 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 MAFGO15525 162 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 GTPBP6O43824 516 aaPredicted RBP13.17□□□□□ -0.3
USP54-209ENST00000464635 KPNA6O60684 536 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 EIF3JO75822 258 aaKnown RBP13.17□□□□□ -0.3
USP54-209ENST00000464635 FGBP02675 491 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 ZNF286BP0CG31 522 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 ERCC5P28715 1186 aaPredicted RBP13.17□□□□□ -0.3
USP54-209ENST00000464635 PPP1R2P41236 205 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 DPYDQ12882 1025 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 MORC3Q14149 939 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 KCNB1Q14721 858 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 SPECC1Q5M775 1068 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 SARM1Q6SZW1 724 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 DEFB128Q7Z7B8 93 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 CABP7Q86V35 215 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 FCHSD1Q86WN1 690 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 POTEDQ86YR6 584 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 MAFAQ8NHW3 353 aaPredicted RBP13.17□□□□□ -0.3
USP54-209ENST00000464635 ETNPPLQ8TBG4 499 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 CTAGE1Q96RT6 745 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 ZNF576Q9H609 170 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 TTC12Q9H892 705 aaPredicted RBP13.17□□□□□ -0.3
USP54-209ENST00000464635 LRWD1Q9UFC0 647 aa13.17□□□□□ -0.3
USP54-209ENST00000464635 YBX2Q9Y2T7 364 aaKnown RBP13.17□□□□□ -0.3
USP54-209ENST00000464635 CHD7Q9P2D1 2997 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 A0A087X0B3 334 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 MEIS1O00470 390 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 SLC37A4O43826 429 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 STAM2O75886 525 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 TDP2O95551 362 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 SUPT20HL2P0C7V6 817 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 FOSL2P15408 326 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 TECP42680 631 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 SP2Q02086 613 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 TPRNQ4KMQ1 711 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 KRT79Q5XKE5 535 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 GDF6Q6KF10 455 aaPredicted RBP13.16□□□□□ -0.3
USP54-209ENST00000464635 VSIG10LQ86VR7 867 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 LENG9Q96B70 501 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 DHX58Q96C10 678 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 CBX8Q9HC52 389 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 A0A0C4DFX4 3053 aa13.16□□□□□ -0.3
USP54-209ENST00000464635 IGLV3-22A0A075B6J6 115 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 DLL1O00548 723 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 UBA1P22314 1058 aaKnown RBP13.15□□□□□ -0.3
USP54-209ENST00000464635 CCND2P30279 289 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 STAT6P42226 847 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 TXKP42681 527 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 PSEN2P49810 448 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 RABGGTBP53611 331 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 TPM4P67936 248 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 PTPN11Q06124 597 aaPredicted RBP13.15□□□□□ -0.3
USP54-209ENST00000464635 PNOCQ13519 176 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 CEP55Q53EZ4 464 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 COBLL1Q53SF7 1204 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 NAALADL2Q58DX5 795 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 PCNX4Q63HM2 1172 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 HAUS3Q68CZ6 603 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.15□□□□□ -0.3
USP54-209ENST00000464635 DHX37Q8IY37 1157 aaKnown RBP13.15□□□□□ -0.3
USP54-209ENST00000464635 ERMNQ8TAM6 284 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 DHX38Q92620 1227 aaKnown RBP13.15□□□□□ -0.3
USP54-209ENST00000464635 EMID1Q96A84 441 aaPredicted RBP13.15□□□□□ -0.3
USP54-209ENST00000464635 RIT2Q99578 217 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 C7orf25Q9BPX7 421 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 MMTAG2Q9BU76 263 aaKnown RBP13.15□□□□□ -0.3
USP54-209ENST00000464635 DNAJC25Q9H1X3 360 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 NKX2-4Q9H2Z4 354 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 BCAS3Q9H6U6 928 aa13.15□□□□□ -0.3
USP54-209ENST00000464635 PVALEFA0A1B0GWK0 134 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 ZBBXA8MT70 800 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 BECN2A8MW95 431 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 GOLGA6L19H0YKK7 550 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 MARCH6O60337 910 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 GGPS1O95749 300 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 F2P00734 622 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 IQCF3P0C7M6 154 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 HOXD8P13378 290 aaPredicted RBP13.14□□□□□ -0.31
USP54-209ENST00000464635 MYOGP15173 224 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 MRPS9P82933 396 aaKnown RBP13.14□□□□□ -0.31
USP54-209ENST00000464635 LAMC2Q13753 1193 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 MFSD10Q14728 455 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 PTGISQ16647 500 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 DGKDQ16760 1214 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 HSDL1Q3SXM5 330 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 TMEM119Q4V9L6 283 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 CELF3Q5SZQ8 465 aaKnown RBP13.14□□□□□ -0.31
USP54-209ENST00000464635 FOXR2Q6PJQ5 311 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.14□□□□□ -0.31
USP54-209ENST00000464635 SESTD1Q86VW0 696 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 RPUSD2Q8IZ73 545 aaKnown RBP13.14□□□□□ -0.31
USP54-209ENST00000464635 PDILTQ8N807 584 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 USP38Q8NB14 1042 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms