RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ADPGKQ9BRR6 497 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 FAM96AQ9H5X1 160 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 MEIS1O00470 390 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 ACTN3Q08043 901 aaPredicted RBP20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 DHX34Q14147 1143 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 PYROXD1Q8WU10 500 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 EIF3HO15372 352 aaKnown RBP eCLIP20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 SORBS3O60504 671 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 PRPSAP1Q14558 356 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 PCGF5Q86SE9 256 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 ENAHQ8N8S7 591 aaPredicted RBP20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 ANO3Q9BYT9 981 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 DHX36Q9H2U1 1008 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 L2HGDHQ9H9P8 463 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 PACSIN2Q9UNF0 486 aaPredicted RBP20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 CYP2D7A0A087X1C5 515 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 STOX1Q6ZVD7 989 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 KCTD1Q719H9 257 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 TCP10L2B9ZVM9 353 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 KPNA2P52292 529 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 HDLBPQ00341 1268 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 DOK7Q18PE1 504 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 PCIF1Q9H4Z3 704 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 ADGRB3O60242 1522 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 TJP3O95049 919 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 KCNH2Q12809 1159 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 MTF1Q14872 753 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 BBOX1O75936 387 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 MX2P20592 715 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 SATB1Q01826 763 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 TFDP1Q14186 410 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 LRRC23Q53EV4 343 aaPredicted RBP20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 THOC1Q96FV9 657 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 RBM41Q96IZ5 413 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 IPO11Q9UI26 975 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 CRB1P82279 1406 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 PFASO15067 1338 aa20.41■□□□□ 0.86
CCDC88B-204ENST00000463837 ESYT3A0FGR9 886 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 RXRBP28702 533 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 COASYQ13057 564 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 GRM4Q14833 912 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 CHD1O14646 1710 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 MDH1P40925 334 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 CDK8P49336 464 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 TBC1D10BQ4KMP7 808 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 SYDE2Q5VT97 1194 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 CCNI2Q6ZMN8 369 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 ANKRD36BP1Q96IX9 119 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 MMS19Q96T76 1030 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 ANKFY1Q9P2R3 1169 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 ADD3Q9UEY8 706 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 NR3C1P04150 777 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 BMP3P12645 472 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 SPOUT1Q5T280 376 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 TBC1D9BQ66K14 1250 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 SPDL1Q96EA4 605 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 PSMD14O00487 310 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 FOXP2O15409 715 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 DNAJC8O75937 253 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 STMN1P16949 149 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 ECE1P42892 770 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 SCNN1DP51172 638 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 STX1BP61266 288 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 BASP1P80723 227 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 EPM2AIP1Q7L775 607 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 TC2NQ8N9U0 490 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 USP17L3A6NCW0 530 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 USP17L4A6NCW7 530 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 CAPN9O14815 690 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 PFDN6O15212 129 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 ZBTB24O43167 697 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 GSTA1P08263 222 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 GSTA2P09210 222 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 SRGAP2BP0DMP2 458 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 RABL6Q3YEC7 729 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 FAM47CQ5HY64 1035 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 USP17L1Q7RTZ2 530 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 EXOC8Q8IYI6 725 aa20.4■□□□□ 0.86
CCDC88B-204ENST00000463837 PNPLA7Q6ZV29 1317 aa20.39■□□□□ 0.86
CCDC88B-204ENST00000463837 RASA4BC9J798 803 aa20.39■□□□□ 0.86
CCDC88B-204ENST00000463837 FOXN1O15353 648 aa20.39■□□□□ 0.86
CCDC88B-204ENST00000463837 RASA4O43374 803 aa20.39■□□□□ 0.86
CCDC88B-204ENST00000463837 CCNA1P78396 465 aa20.39■□□□□ 0.86
CCDC88B-204ENST00000463837 DYNLL2Q96FJ2 89 aa20.39■□□□□ 0.86
CCDC88B-204ENST00000463837 NCK2O43639 380 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 SURF1Q15526 300 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 DARS2Q6PI48 645 aaKnown RBP20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 PDZD8Q8NEN9 1154 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 HPCAL4Q9UM19 191 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 KRT37O76014 449 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 ARL4CP56559 192 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 UBE2SQ16763 222 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 NOC2LQ9Y3T9 749 aaKnown RBP20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 H0Y3Z8 333 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 SPAG7O75391 227 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 DYNLT1P63172 113 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 NAALADL2Q58DX5 795 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 GADL1Q6ZQY3 521 aa20.39■□□□□ 0.85
CCDC88B-204ENST00000463837 SSU72P8A0A1W2PR75 194 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 ZBTB22O15209 634 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms