RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 PHF20Q9BVI0 1012 aa5.85□□□□□ -1.47
USH2A-203ENST00000463147 NOP58Q9Y2X3 529 aaKnown RBP5.85□□□□□ -1.47
USH2A-203ENST00000463147 TMEM191CA6NGB0 347 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 MARCH6O60337 910 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 CLSTN1O94985 981 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 DBPQ10586 325 aaPredicted RBP5.84□□□□□ -1.47
USH2A-203ENST00000463147 WDR72Q3MJ13 1102 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 RNF187Q5TA31 235 aaPredicted RBP5.84□□□□□ -1.47
USH2A-203ENST00000463147 LBX2Q6XYB7 198 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 USP30Q70CQ3 517 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 ULK2Q8IYT8 1036 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 NLGN4XQ8N0W4 816 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 STAG1Q8WVM7 1258 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 APPBP2Q92624 585 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 CHMP4AQ9BY43 222 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 ZDHHC5Q9C0B5 715 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 TLR9Q9NR96 1032 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 PLA2G3Q9NZ20 509 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 KLHL42Q9P2K6 505 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 PFDN2Q9UHV9 154 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 DMRT1Q9Y5R6 373 aa5.84□□□□□ -1.47
USH2A-203ENST00000463147 PMS2P1A4D2B8 440 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 FAM47E-STBD1D6RA91 191 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 DNAJC6O75061 913 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 LTFP02788 710 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 HMGCRP04035 888 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 RRADP55042 308 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 PPP2R2AP63151 447 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 IFRD2Q12894 506 aaPredicted RBP5.83□□□□□ -1.48
USH2A-203ENST00000463147 C2orf27AQ580R0 203 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 FNDC7Q5VTL7 733 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 USP53Q70EK8 1073 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 SGMS1Q86VZ5 419 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 RBM12BQ8IXT5 1001 aaKnown RBP5.83□□□□□ -1.48
USH2A-203ENST00000463147 SPC25Q9HBM1 224 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 ARHGAP28Q9P2N2 729 aa5.83□□□□□ -1.48
USH2A-203ENST00000463147 KDM2BQ8NHM5 1336 aa5.82□□□□□ -1.48
USH2A-203ENST00000463147 MSCO60682 206 aa5.82□□□□□ -1.48
USH2A-203ENST00000463147 COL6A2P12110 1019 aa5.82□□□□□ -1.48
USH2A-203ENST00000463147 MSX2P35548 267 aaPredicted RBP5.82□□□□□ -1.48
USH2A-203ENST00000463147 MASP1P48740 699 aa5.82□□□□□ -1.48
USH2A-203ENST00000463147 FOXL1Q12952 345 aa5.82□□□□□ -1.48
USH2A-203ENST00000463147 HSP90AA2PQ14568 343 aaPredicted RBP5.82□□□□□ -1.48
USH2A-203ENST00000463147 HOMER1Q86YM7 354 aa5.82□□□□□ -1.48
USH2A-203ENST00000463147 TMPRSS6Q8IU80 811 aa5.82□□□□□ -1.48
USH2A-203ENST00000463147 IFNL3Q8IZI9 196 aa5.82□□□□□ -1.48
USH2A-203ENST00000463147 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.82□□□□□ -1.48
USH2A-203ENST00000463147 IER2Q9BTL4 223 aa5.82□□□□□ -1.48
USH2A-203ENST00000463147 PPARGC1AQ9UBK2 798 aaKnown RBP5.82□□□□□ -1.48
USH2A-203ENST00000463147 REXO2Q9Y3B8 237 aaKnown RBP5.82□□□□□ -1.48
USH2A-203ENST00000463147 TNFRSF18Q9Y5U5 241 aa5.82□□□□□ -1.48
USH2A-203ENST00000463147 PTCH2Q9Y6C5 1203 aa5.82□□□□□ -1.48
USH2A-203ENST00000463147 KRTAP23-1A1A580 65 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 ACOT7O00154 380 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 MATN2O00339 956 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 NKRFO15226 690 aaKnown RBP eCLIP5.81□□□□□ -1.48
USH2A-203ENST00000463147 MEOX1P50221 254 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 GPR85P60893 370 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 GRM7Q14831 915 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 C21orf62-AS1Q17RA5 79 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 MTERF2Q49AM1 385 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 C16orf86Q6ZW13 317 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 VOPP1Q96AW1 172 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 AGAP2Q99490 1192 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 MPHOSPH9Q99550 1183 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 KCNJ15Q99712 375 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 FAM126AQ9BYI3 521 aaPredicted RBP5.81□□□□□ -1.48
USH2A-203ENST00000463147 TELO2Q9Y4R8 837 aa5.81□□□□□ -1.48
USH2A-203ENST00000463147 PPP1R12AO14974 1030 aaPredicted RBP5.8□□□□□ -1.48
USH2A-203ENST00000463147 DLX3O60479 287 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 SOD2P04179 222 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 FAM153BP0C7A2 387 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 IBSPP21815 317 aaPredicted RBP5.8□□□□□ -1.48
USH2A-203ENST00000463147 GJA4P35212 333 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 ANAPC15P60006 121 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 EIF4HQ15056 248 aaKnown RBP5.8□□□□□ -1.48
USH2A-203ENST00000463147 DALRD3Q5D0E6 543 aaKnown RBP5.8□□□□□ -1.48
USH2A-203ENST00000463147 BTBD8Q5XKL5 378 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 WDR48Q8TAF3 677 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 THAP3Q8WTV1 239 aaPredicted RBP5.8□□□□□ -1.48
USH2A-203ENST00000463147 CLIP3Q96DZ5 547 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 SGSM3Q96HU1 749 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 ALG1Q9BT22 464 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 OR10A2Q9H208 303 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 SLC39A2Q9NP94 309 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 PRKAB1Q9Y478 270 aa5.8□□□□□ -1.48
USH2A-203ENST00000463147 IQCA1LA6NCM1 817 aa5.79□□□□□ -1.48
USH2A-203ENST00000463147 PARNO95453 639 aaKnown RBP5.79□□□□□ -1.48
USH2A-203ENST00000463147 ASMTLO95671 621 aa5.79□□□□□ -1.48
USH2A-203ENST00000463147 POU3F3P20264 500 aaPredicted RBP5.79□□□□□ -1.48
USH2A-203ENST00000463147 NOLC1Q14978 699 aaKnown RBP eCLIP5.79□□□□□ -1.48
USH2A-203ENST00000463147 SLC10A6Q3KNW5 377 aa5.79□□□□□ -1.48
USH2A-203ENST00000463147 SCUBE1Q8IWY4 988 aa5.79□□□□□ -1.48
USH2A-203ENST00000463147 D2HGDHQ8N465 521 aa5.79□□□□□ -1.48
USH2A-203ENST00000463147 ZCRB1Q8TBF4 217 aaKnown RBP5.79□□□□□ -1.48
USH2A-203ENST00000463147 GALNT8Q9NY28 637 aa5.79□□□□□ -1.48
USH2A-203ENST00000463147 CEP72Q9P209 647 aa5.79□□□□□ -1.48
USH2A-203ENST00000463147 CD2APQ9Y5K6 639 aa5.79□□□□□ -1.48
USH2A-203ENST00000463147 A0A1W2PQU0 124 aa5.78□□□□□ -1.48
USH2A-203ENST00000463147 CAPN14A8MX76 684 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms