RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 MSRAQ9UJ68 235 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 ZFP69BQ9UJL9 534 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 SMG5Q9UPR3 1016 aaKnown RBP5.69□□□□□ -1.5
VPS41-210ENST00000462429 K7ESF4 209 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 KATNA1O75449 491 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 PRLP01236 227 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 PDGFRBP09619 1106 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 C1QTNF9P0C862 333 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 PI3P19957 117 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 GLRBP48167 497 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 SLC6A3Q01959 620 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 ITKQ08881 620 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 SMAD4Q13485 552 aaKnown RBP5.68□□□□□ -1.5
VPS41-210ENST00000462429 SSPNQ14714 243 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 ZNF385BQ569K4 471 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 BRDTQ58F21 947 aaPredicted RBP5.68□□□□□ -1.5
VPS41-210ENST00000462429 ZNF648Q5T619 568 aaPredicted RBP5.68□□□□□ -1.5
VPS41-210ENST00000462429 PRAMEF9Q5VWM5 478 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 SLFN12LQ6IEE8 588 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 FNIP1Q8TF40 1166 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 MTMR8Q96EF0 704 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 MENTQ9BUN1 341 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 CROTQ9UKG9 612 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 KCTD3Q9Y597 815 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 WASHC2AQ641Q2 1341 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 WASHC2CQ9Y4E1 1318 aa5.68□□□□□ -1.5
VPS41-210ENST00000462429 MAFGO15525 162 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 PLA2G1BP04054 148 aaKnown RBP5.67□□□□□ -1.5
VPS41-210ENST00000462429 KRT1P04264 644 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 CHGBP05060 677 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 APEX1P27695 318 aaKnown RBP5.67□□□□□ -1.5
VPS41-210ENST00000462429 THBS2P35442 1172 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 HTRA3P83110 453 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 CAP1Q01518 475 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 MTMR1Q13613 665 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 TTLL7Q6ZT98 887 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 CXXC5Q7LFL8 322 aaKnown RBP5.67□□□□□ -1.5
VPS41-210ENST00000462429 PWWP2AQ96N64 755 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 ACAP3Q96P50 834 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 FMNL2Q96PY5 1086 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 TACO1Q9BSH4 297 aaKnown RBP5.67□□□□□ -1.5
VPS41-210ENST00000462429 AMNQ9BXJ7 453 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 OR10A5Q9H207 317 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 MS4A5Q9H3V2 200 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 POFUT1Q9H488 388 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 VTA1Q9NP79 307 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 CD320Q9NPF0 282 aa5.67□□□□□ -1.5
VPS41-210ENST00000462429 TOPORSQ9NS56 1045 aaPredicted RBP5.67□□□□□ -1.5
VPS41-210ENST00000462429 ST20-MTHFSA0A0A6YYL1 179 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 GOLGA8AA7E2F4 631 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 GOLGA8BA8MQT2 603 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 PRPF6O94906 941 aaKnown RBP5.66□□□□□ -1.5
VPS41-210ENST00000462429 APOL3O95236 402 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 IL18BPO95998 194 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 RAP1GAPP47736 663 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 ADCY2Q08462 1091 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 SYDE2Q5VT97 1194 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 KIAA1841Q6NSI8 718 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 LRSAM1Q6UWE0 723 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 CXorf67Q86X51 503 aaPredicted RBP5.66□□□□□ -1.5
VPS41-210ENST00000462429 STPG3Q8N7X2 389 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 STAG1Q8WVM7 1258 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 RPGRQ92834 1020 aaKnown RBP5.66□□□□□ -1.5
VPS41-210ENST00000462429 FERMT2Q96AC1 680 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 ZNF496Q96IT1 587 aaPredicted RBP5.66□□□□□ -1.5
VPS41-210ENST00000462429 TRIM8Q9BZR9 551 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 WNT8AQ9H1J5 351 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 EPB41L4AQ9HCS5 686 aaPredicted RBP5.66□□□□□ -1.5
VPS41-210ENST00000462429 KCND1Q9NSA2 647 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 C14orf119Q9NWQ9 140 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 TRHDEQ9UKU6 1024 aa5.66□□□□□ -1.5
VPS41-210ENST00000462429 LCHNA4D1U4 455 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 RPL13P26373 211 aaKnown RBP5.65□□□□□ -1.5
VPS41-210ENST00000462429 TXKP42681 527 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 RGS3P49796 1198 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 BCAR1P56945 870 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 LINC00310P59036 64 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 ERVK-21P61565 698 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 IL13RA1P78552 427 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 MAP3K12Q12852 859 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 MYBPC3Q14896 1274 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 STILQ15468 1287 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 KCNA10Q16322 511 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 WDR72Q3MJ13 1102 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 PHF19Q5T6S3 580 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 TRMT10BQ6PF06 316 aaKnown RBP5.65□□□□□ -1.5
VPS41-210ENST00000462429 SAPCD2Q86UD0 394 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 MYL10Q9BUA6 226 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 NTMQ9P121 344 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 FBXO10Q9UK96 956 aa5.65□□□□□ -1.5
VPS41-210ENST00000462429 NPIPB6E9PJ23 425 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 H0Y858 1186 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 MAFO75444 373 aaPredicted RBP5.64□□□□□ -1.51
VPS41-210ENST00000462429 SCAND1P57086 179 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 NFATC3Q12968 1075 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 KLF1Q13351 362 aaPredicted RBP5.64□□□□□ -1.51
VPS41-210ENST00000462429 RTP5Q14D33 572 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 PRR31Q5SQ13 230 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 KANSL1Q7Z3B3 1105 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 TMEM151BQ8IW70 566 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms