RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 PLA2G4FQ68DD2 849 aa25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 FAM173BQ6P4H8 233 aa25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 PSRC1Q6PGN9 363 aaPredicted RBP25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 TDHQ8IZJ6 230 aa25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 METTL13Q8N6R0 699 aa25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 HSD17B14Q9BPX1 270 aa25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 NIFKQ9BYG3 293 aaKnown RBP25.58■■□□□ 1.69
CCDC28B-203ENST00000461819 SMIM35A0A1B0GVV1 85 aa25.57■■□□□ 1.68
CCDC28B-203ENST00000461819 MAGEB2O15479 319 aa25.57■■□□□ 1.68
CCDC28B-203ENST00000461819 PFKMP08237 780 aa25.57■■□□□ 1.68
CCDC28B-203ENST00000461819 ZSCAN22P10073 491 aaPredicted RBP25.57■■□□□ 1.68
CCDC28B-203ENST00000461819 YWHABP31946 246 aaKnown RBP25.57■■□□□ 1.68
CCDC28B-203ENST00000461819 ANO5Q75V66 913 aa25.57■■□□□ 1.68
CCDC28B-203ENST00000461819 RPAINQ86UA6 219 aa25.57■■□□□ 1.68
CCDC28B-203ENST00000461819 CCDC43Q96MW1 224 aaKnown RBP25.57■■□□□ 1.68
CCDC28B-203ENST00000461819 SH2D3AQ9BRG2 576 aa25.57■■□□□ 1.68
CCDC28B-203ENST00000461819 FTOQ9C0B1 505 aaKnown RBP eCLIP25.57■■□□□ 1.68
CCDC28B-203ENST00000461819 A0A1W2PPC1 479 aa25.56■■□□□ 1.68
CCDC28B-203ENST00000461819 M0QZ92 97 aa25.56■■□□□ 1.68
CCDC28B-203ENST00000461819 PDIA5Q14554 519 aa25.56■■□□□ 1.68
CCDC28B-203ENST00000461819 ARL6IP4Q66PJ3 421 aaKnown RBP25.56■■□□□ 1.68
CCDC28B-203ENST00000461819 TRAF7Q6Q0C0 670 aa25.56■■□□□ 1.68
CCDC28B-203ENST00000461819 OTUD6AQ7L8S5 288 aa25.56■■□□□ 1.68
CCDC28B-203ENST00000461819 IGSF22Q8N9C0 903 aa25.56■■□□□ 1.68
CCDC28B-203ENST00000461819 TET1Q8NFU7 2136 aa25.56■■□□□ 1.68
CCDC28B-203ENST00000461819 BUD13Q9BRD0 619 aaKnown RBP eCLIP25.56■■□□□ 1.68
CCDC28B-203ENST00000461819 TUFT1Q9NNX1 390 aa25.56■■□□□ 1.68
CCDC28B-203ENST00000461819 RANBP2P49792 3224 aaKnown RBP25.56■■□□□ 1.68
CCDC28B-203ENST00000461819 VWA3AA6NCI4 1184 aa25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 MRPS6P82932 125 aaKnown RBP25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 TMEM62Q0P6H9 643 aa25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 SHHQ15465 462 aa25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 TARBP2Q15633 366 aaKnown RBP25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 C9orf50Q5SZB4 431 aa25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 ZNF365Q70YC5 407 aa25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 CEP170P1Q96L14 293 aa25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 POLR3CQ9BUI4 534 aaPredicted RBP25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 CYP26B1Q9NR63 512 aa25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 CLIC4Q9Y696 253 aa25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 STK24Q9Y6E0 443 aa25.55■■□□□ 1.68
CCDC28B-203ENST00000461819 MED24O75448 989 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 LYPLA2O95372 231 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 F13A1P00488 732 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 TMOD1P28289 359 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 CCT6AP40227 531 aaKnown RBP25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 CLCN3P51790 818 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 NPEPPSP55786 919 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 CEBPZQ03701 1054 aaKnown RBP25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 PKP1Q13835 747 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 IL17AQ16552 155 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 XKR9Q5GH70 373 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 TMEM240Q5SV17 173 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 IER5Q5VY09 327 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 EFCAB12Q6NXP0 572 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 C16orf59Q7L2K0 433 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 CATSPER3Q86XQ3 398 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 NME8Q8N427 588 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 LRRC71Q8N4P6 559 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 SNX29Q8TEQ0 813 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 RNPC3Q96LT9 517 aaKnown RBP25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 MAP7D2Q96T17 732 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 SUGCTQ9HAC7 445 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 CDY2AQ9Y6F7 541 aa25.54■■□□□ 1.68
CCDC28B-203ENST00000461819 NBNO60934 754 aa25.53■■□□□ 1.68
CCDC28B-203ENST00000461819 FGBP02675 491 aa25.53■■□□□ 1.68
CCDC28B-203ENST00000461819 SPATA31C1P0DKV0 1188 aa25.53■■□□□ 1.68
CCDC28B-203ENST00000461819 RPA1P27694 616 aa25.53■■□□□ 1.68
CCDC28B-203ENST00000461819 MBTPS1Q14703 1052 aa25.53■■□□□ 1.68
CCDC28B-203ENST00000461819 FAM26DQ5JW98 314 aa25.53■■□□□ 1.68
CCDC28B-203ENST00000461819 KRT79Q5XKE5 535 aa25.53■■□□□ 1.68
CCDC28B-203ENST00000461819 KIAA0319LQ8IZA0 1049 aa25.53■■□□□ 1.68
CCDC28B-203ENST00000461819 AKT3Q9Y243 479 aa25.53■■□□□ 1.68
CCDC28B-203ENST00000461819 PP2D1A8MPX8 630 aa25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 ZBTB39O15060 712 aa25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 CHRNA1P02708 482 aa25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 ACTN1P12814 892 aa25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 POLGP54098 1239 aaPredicted RBP25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 POTEGQ6S5H5 508 aa25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 SLC7A3Q8WY07 619 aa25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 ZNF396Q96N95 335 aaPredicted RBP25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 JPH2Q9BR39 696 aaPredicted RBP25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 MTIF3Q9H2K0 278 aaKnown RBP25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 PPME1Q9Y570 386 aa25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 TRPV2Q9Y5S1 764 aa25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 TRIOBPQ9H2D6 2365 aa25.52■■□□□ 1.68
CCDC28B-203ENST00000461819 CXCL10P02778 98 aa25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 DNM2P50570 870 aa25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 MGAT3Q09327 533 aa25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 GPNMBQ14956 572 aa25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 OTOP2Q7RTS6 562 aa25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 ZNF579Q8NAF0 562 aaKnown RBP25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 PIGOQ8TEQ8 1089 aa25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 VWCEQ96DN2 955 aa25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 USP28Q96RU2 1077 aa25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 CEP89Q96ST8 783 aa25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 ANKEF1Q9NU02 776 aa25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 GINS2Q9Y248 185 aa25.51■■□□□ 1.67
CCDC28B-203ENST00000461819 MAFO75444 373 aaPredicted RBP25.5■■□□□ 1.67
CCDC28B-203ENST00000461819 VTNP04004 478 aa25.5■■□□□ 1.67
CCDC28B-203ENST00000461819 MUTP22033 750 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms