RNA–Protein interactions for RNA: ENST00000460158.1

VPS8-215, Transcript of VPS8, CORVET complex subunit, human

TSL 3

Gene VPS8, Length 366 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS8-215	ENST00000460158	PASD1	Q8IV76	773 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	SP8	Q8IXZ3	490 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	RPUSD2	Q8IZ73	545 aa	Known RBP	4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	DTX3	Q8N9I9	347 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	HIPK4	Q8NE63	616 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	SLC5A5	Q92911	643 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	ZBTB8A	Q96BR9	441 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	BORCS6	Q96GS4	357 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	C16orf92	Q96LL3	132 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	ZSWIM3	Q96MP5	696 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	UCKL1	Q9NWZ5	548 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	APOBEC2	Q9Y235	224 aa	Known RBP	4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	PHLDB1	Q86UU1	1377 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	LCHN	A4D1U4	455 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	MPIG6B	O95866	241 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	CELA3B	P08861	270 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	PTGS1	P23219	599 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	GLRB	P48167	497 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	FNTB	P49356	437 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	ANAPC15	P60006	121 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	IGBP1	P78318	339 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	FAM50A	Q14320	339 aa	Known RBP	4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	TERF2	Q15554	542 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	DDB1	Q16531	1140 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	BROX	Q5VW32	411 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	RNF219	Q5W0B1	726 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	CNKSR3	Q6P9H4	555 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	RTN4RL1	Q86UN2	441 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	LINC00482	Q8N8I6	264 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	KY	Q8NBH2	561 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	IGDCC4	Q8TDY8	1250 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	FNIP1	Q8TF40	1166 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	COG1	Q8WTW3	980 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	RTF1	Q92541	710 aa	Known RBP	4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	FOXRED1	Q96CU9	486 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	PWWP2A	Q96N64	755 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	TMEM209	Q96SK2	561 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	AMN	Q9BXJ7	453 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	PCDH18	Q9HCL0	1135 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	LUC7L	Q9NQ29	371 aa	Known RBP	4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	INCENP	Q9NQS7	918 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	DLL4	Q9NR61	685 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	ASB1	Q9Y576	335 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	PMF1-BGLAP	U3KQ54	211 aa		4.61	□□□□□ -1.67
VPS8-215	ENST00000460158	PPM1G	O15355	546 aa	Predicted RBP	4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	IL18BP	O95998	194 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	PHC1	P78364	1004 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	HTRA3	P83110	453 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	LRRC32	Q14392	662 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	EPHA7	Q15375	998 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	LRSAM1	Q6UWE0	723 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	PRRT2	Q7Z6L0	340 aa	Predicted RBP	4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	SPATS2	Q86XZ4	545 aa	Known RBP	4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	FAM9A	Q8IZU1	332 aa	Predicted RBP	4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	CLRN3	Q8NCR9	226 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	SCYL1	Q96KG9	808 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	TEPSIN	Q96N21	525 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	VTA1	Q9NP79	307 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	SPATA6	Q9NWH7	488 aa	Predicted RBP	4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	SLC5A4	Q9NY91	659 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	ARHGAP20	Q9P2F6	1191 aa		4.6	□□□□□ -1.67
VPS8-215	ENST00000460158	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	UBA6	A0AVT1	1052 aa	Predicted RBP	4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	ULK1	O75385	1050 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	ADRB1	P08588	477 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	CD40	P25942	277 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	LSP1	P33241	339 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	GUCY2F	P51841	1108 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	KRTAP10-2	P60368	255 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	DLX2	Q07687	328 aa	Predicted RBP	4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	GPR158	Q5T848	1215 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	IQSEC1	Q6DN90	963 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	ZZZ3	Q8IYH5	903 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	STPG3	Q8N7X2	389 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	TTLL6	Q8N841	843 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	LINC01356	Q8N9X3	169 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	ZNF610	Q8N9Z0	462 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	FEZF2	Q8TBJ5	459 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	ZNF496	Q96IT1	587 aa	Predicted RBP	4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	CLIC6	Q96NY7	704 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	TACO1	Q9BSH4	297 aa	Known RBP	4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	TRIM8	Q9BZR9	551 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	SEMA4A	Q9H3S1	761 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	GALNT8	Q9NY28	637 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	ZFP69B	Q9UJL9	534 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	CROT	Q9UKG9	612 aa		4.59	□□□□□ -1.67
VPS8-215	ENST00000460158	KATNA1	O75449	491 aa		4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	PRKD3	O94806	890 aa		4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	PRL	P01236	227 aa		4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	ECE1	P42892	770 aa		4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	RGS3	P49796	1198 aa		4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	MLLT6	P55198	1093 aa	Predicted RBP	4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	SESN3	P58005	492 aa		4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	CAP1	Q01518	475 aa		4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	SLC6A3	Q01959	620 aa		4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	ALDH6A1	Q02252	535 aa	Known RBP	4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	ADCY1	Q08828	1119 aa		4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	VWA3B	Q502W6	1294 aa		4.58	□□□□□ -1.68
VPS8-215	ENST00000460158	TTC38	Q5R3I4	469 aa		4.58	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 17 ms