RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 SENP7Q9BQF6 1050 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 BHMT2Q9H2M3 363 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 ABHD16BQ9H3Z7 469 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 SLC5A4Q9NY91 659 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 TCEAL9Q9UHQ7 104 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 PCDHA10Q9Y5I2 948 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 NFASCO94856 1347 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 A6NJR5 290 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 DLL1O00548 723 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 BACH1O14867 736 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 MYCP01106 439 aaPredicted RBP11.48□□□□□ -0.57
USP39-210ENST00000459775 IGHA2P01877 340 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 PLA2G4BP0C869 781 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 ATP4AP20648 1035 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 BMP6P22004 513 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 MARK3P27448 753 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 NPEPPSP55786 919 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 HYIQ5T013 277 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 HAUS3Q68CZ6 603 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 ZNF746Q6NUN9 644 aaPredicted RBP11.48□□□□□ -0.57
USP39-210ENST00000459775 METTL7BQ6UX53 244 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 AFG1LQ8WV93 481 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 LARP4BQ92615 738 aaKnown RBP11.48□□□□□ -0.57
USP39-210ENST00000459775 POLR3CQ9BUI4 534 aaPredicted RBP11.48□□□□□ -0.57
USP39-210ENST00000459775 VTA1Q9NP79 307 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 KBTBD4Q9NVX7 518 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 KIAA1468Q9P260 1216 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 SRRDQ9UH36 339 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 DYNC1LI2O43237 492 aaPredicted RBP11.48□□□□□ -0.57
USP39-210ENST00000459775 P4HBP07237 508 aaKnown RBP11.48□□□□□ -0.57
USP39-210ENST00000459775 TGFB3P10600 412 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 TCF7P36402 384 aaPredicted RBP11.48□□□□□ -0.57
USP39-210ENST00000459775 DPYDQ12882 1025 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 NEDD9Q14511 834 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 ARSHQ5FYA8 562 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 RBM43Q6ZSC3 357 aaKnown RBP11.48□□□□□ -0.57
USP39-210ENST00000459775 MAEAQ7L5Y9 396 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 SMYD4Q8IYR2 804 aaPredicted RBP11.48□□□□□ -0.57
USP39-210ENST00000459775 ZBTB10Q96DT7 871 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 GPR20Q99678 358 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 RUSC1Q9BVN2 902 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 NR2E3Q9Y5X4 410 aa11.48□□□□□ -0.57
USP39-210ENST00000459775 SUPT20HL2P0C7V6 817 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 CNGA1P29973 690 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 QARSP47897 775 aaKnown RBP11.47□□□□□ -0.57
USP39-210ENST00000459775 SLC12A3P55017 1021 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 TNFAIP2Q03169 654 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 CACNB2Q08289 660 aaPredicted RBP11.47□□□□□ -0.57
USP39-210ENST00000459775 DMTNQ08495 405 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 CHRDL2Q6WN34 429 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 SLC17A8Q8NDX2 589 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 ITFG2Q969R8 447 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 FUCA2Q9BTY2 467 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 DNM3Q9UQ16 869 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 RBM47A0AV96 593 aaKnown RBP11.47□□□□□ -0.57
USP39-210ENST00000459775 SFI1A8K8P3 1242 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 NOP56O00567 594 aaKnown RBP11.47□□□□□ -0.57
USP39-210ENST00000459775 STBD1O95210 358 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 ZNF286BP0CG31 522 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 XRCC5P13010 732 aaKnown RBP11.47□□□□□ -0.57
USP39-210ENST00000459775 HOXD10P28358 340 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 CCND3P30281 292 aaPredicted RBP11.47□□□□□ -0.57
USP39-210ENST00000459775 JAK3P52333 1124 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 CHMP4BP1P59074 171 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 BEX3Q00994 111 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 TYRO3Q06418 890 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 DPCR1Q3MIW9 517 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 ANO5Q75V66 913 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 SV2BQ7L1I2 683 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 RNF214Q8ND24 703 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 TRIM9Q9C026 710 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 TUFT1Q9NNX1 390 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 MAN1B1Q9UKM7 699 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 MAPK8IP1Q9UQF2 711 aa11.47□□□□□ -0.57
USP39-210ENST00000459775 MGAMO43451 1857 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 KDM3AQ9Y4C1 1321 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 ZNF236Q9UL36 1845 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 RSPH10B2B2RC85 870 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 ADCY3O60266 1144 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 ATG7O95352 703 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 PSAPP07602 524 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 RSPH10BP0C881 870 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 CYP11B2P19099 503 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 YWHABP31946 246 aaKnown RBP11.46□□□□□ -0.57
USP39-210ENST00000459775 SFNP31947 248 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 MNX1P50219 401 aaPredicted RBP11.46□□□□□ -0.57
USP39-210ENST00000459775 DUSP28Q4G0W2 176 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 C11orf57Q6ZUT1 292 aaPredicted RBP11.46□□□□□ -0.57
USP39-210ENST00000459775 GPBP1Q86WP2 473 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 GLIS3Q8NEA6 775 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 SEPT1Q8WYJ6 367 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 DDX12PQ92771 950 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 NT5C3AQ9H0P0 336 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 DNAJC25Q9H1X3 360 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 ZSWIM4Q9H7M6 989 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 STK17AQ9UEE5 414 aa11.46□□□□□ -0.57
USP39-210ENST00000459775 MYADML2A6NDP7 307 aa11.45□□□□□ -0.58
USP39-210ENST00000459775 KLRC4O43908 158 aa11.45□□□□□ -0.58
USP39-210ENST00000459775 GH1P01241 217 aa11.45□□□□□ -0.58
USP39-210ENST00000459775 PRKAR2AP13861 404 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms