RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 KLRC3Q07444 240 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 MYBPC2Q14324 1141 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 PPP2R5EQ16537 467 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 ALKBH5Q6P6C2 394 aaKnown RBP14.93□□□□□ -0.02
COL6A3-207ENST00000433762 SIAH1Q8IUQ4 282 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 MS4A14Q96JA4 679 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 ZIM3Q96PE6 472 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 TAF1DQ9H5J8 278 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-207ENST00000433762 SLITRK6Q9H5Y7 841 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 EPB41L5Q9HCM4 733 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 SIX2Q9NPC8 291 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 RABGAP1Q9Y3P9 1069 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 PSME4Q14997 1843 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 HMGB1P1B2RPK0 211 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-207ENST00000433762 MSH4O15457 936 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 FTCDO95954 541 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 CCDC172P0C7W6 258 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 TMEM174Q8WUU8 243 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 PSMB7Q99436 277 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 EHD2Q9NZN4 543 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 FAM198AQ9UFP1 575 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 NCANO14594 1321 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 GRIN2DO15399 1336 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 SHTN1A0MZ66 631 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 FAM86B1E9PN63 330 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 PGRMC1O00264 195 aaKnown RBP14.92□□□□□ -0.02
COL6A3-207ENST00000433762 AKAP3O75969 853 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 CPP00450 1065 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 H2AFZP0C0S5 128 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 FAM86B2P0C5J1 330 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 SLC9A1P19634 815 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 GUCY2DQ02846 1103 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 PABPC4Q13310 644 aaKnown RBP eCLIP14.92□□□□□ -0.02
COL6A3-207ENST00000433762 PPP2R5CQ13362 524 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 SPDYCQ5MJ68 293 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 H2AFVQ71UI9 128 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 TPCN2Q8NHX9 752 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 PPM1EQ8WY54 764 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 LRRC45Q96CN5 670 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 PAGR1Q9BTK6 254 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 SMARCAL1Q9NZC9 954 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 RSPH14Q9UHP6 348 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 LCMT1Q9UIC8 334 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 G3V3G9 751 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 TULP1O00294 542 aaPredicted RBP14.92□□□□□ -0.02
COL6A3-207ENST00000433762 BMP3P12645 472 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 LMNB1P20700 586 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 PSMC2P35998 433 aaKnown RBP14.92□□□□□ -0.02
COL6A3-207ENST00000433762 STAT1P42224 750 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 CARSP49589 748 aaKnown RBP14.92□□□□□ -0.02
COL6A3-207ENST00000433762 ZNF131P52739 623 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 PSMC6P62333 389 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 PPP2R5AQ15172 486 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 ABCB5Q2M3G0 1257 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 TTMPQ5BVD1 217 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 DCAF8Q5TAQ9 597 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 CASKIN2Q8WXE0 1202 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 MASTLQ96GX5 879 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 KRT12Q99456 494 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 P2RX7Q99572 595 aaKnown RBP14.92□□□□□ -0.02
COL6A3-207ENST00000433762 HSD17B14Q9BPX1 270 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 EIF2AK1Q9BQI3 630 aaKnown RBP14.92□□□□□ -0.02
COL6A3-207ENST00000433762 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.92□□□□□ -0.02
COL6A3-207ENST00000433762 PACSIN1Q9BY11 444 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 EHMT1Q9H9B1 1298 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 KCNQ5Q9NR82 932 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 ODF2LQ9ULJ1 636 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 NFU1Q9UMS0 254 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 STXBP5LQ9Y2K9 1186 aa14.92□□□□□ -0.02
COL6A3-207ENST00000433762 FRMPD4Q14CM0 1322 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 EBAG9O00559 213 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 NDUFB10O96000 172 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 CACNB1Q02641 598 aaPredicted RBP14.91□□□□□ -0.02
COL6A3-207ENST00000433762 SEC14L1Q92503 715 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 ZHX3Q9H4I2 956 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 TMEM51Q9NW97 253 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 MYH11P35749 1972 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 SCN9AQ15858 1988 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 IGLV3-22A0A075B6J6 115 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 DDTLA6NHG4 134 aaPredicted RBP14.91□□□□□ -0.02
COL6A3-207ENST00000433762 ERCC3P19447 782 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 MTMR3Q13615 1198 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 RINT1Q6NUQ1 792 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 FOXR1Q6PIV2 292 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 SLC30A5Q8TAD4 765 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 RBM46Q8TBY0 533 aaKnown RBP14.91□□□□□ -0.02
COL6A3-207ENST00000433762 STK33Q9BYT3 514 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 GCNT4Q9P109 453 aa14.91□□□□□ -0.02
COL6A3-207ENST00000433762 KCNK3O14649 394 aa14.9□□□□□ -0.02
COL6A3-207ENST00000433762 RAD51CO43502 376 aa14.9□□□□□ -0.02
COL6A3-207ENST00000433762 DACT2Q5SW24 774 aa14.9□□□□□ -0.02
COL6A3-207ENST00000433762 C1orf186Q6ZWK4 172 aa14.9□□□□□ -0.02
COL6A3-207ENST00000433762 SLC9A9Q8IVB4 645 aa14.9□□□□□ -0.02
COL6A3-207ENST00000433762 ZFPM1Q8IX07 1006 aa14.9□□□□□ -0.02
COL6A3-207ENST00000433762 SLC5A5Q92911 643 aa14.9□□□□□ -0.02
COL6A3-207ENST00000433762 CCDC43Q96MW1 224 aaKnown RBP14.9□□□□□ -0.02
COL6A3-207ENST00000433762 BHMT2Q9H2M3 363 aa14.9□□□□□ -0.02
COL6A3-207ENST00000433762 ZMYM2Q9UBW7 1377 aa14.9□□□□□ -0.02
COL6A3-207ENST00000433762 A0A087WUV0 522 aaPredicted RBP14.9□□□□□ -0.02
COL6A3-207ENST00000433762 OPLAHO14841 1288 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms