RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 LRRC45Q96CN5 670 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 FAM153AQ9UHL3 310 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 PACSIN2Q9UNF0 486 aaPredicted RBP12.34□□□□□ -0.43
USP4-205ENST00000431357 ATXN2Q99700 1313 aaKnown RBP12.34□□□□□ -0.43
USP4-205ENST00000431357 ZNF233A6NK53 670 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 BHMG1C9JSJ3 638 aaPredicted RBP12.34□□□□□ -0.43
USP4-205ENST00000431357 PGRMC1O00264 195 aaKnown RBP12.34□□□□□ -0.43
USP4-205ENST00000431357 POLRMTO00411 1230 aaKnown RBP12.34□□□□□ -0.43
USP4-205ENST00000431357 EIF3DO15371 548 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP4-205ENST00000431357 HOXD13P35453 343 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 JAM2P57087 298 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 PSMC6P62333 389 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 FAM182BQ5T319 152 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 SLFN11Q7Z7L1 901 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 TADA2BQ86TJ2 420 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 EGFL6Q8IUX8 553 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 TPCN2Q8NHX9 752 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 PIK3R5Q8WYR1 880 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 ATP6V1G3Q96LB4 118 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.34□□□□□ -0.433e-7■■■□□ 18.7
USP4-205ENST00000431357 OLFML3Q9NRN5 406 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 SUCLA2Q9P2R7 463 aaPredicted RBP12.34□□□□□ -0.43
USP4-205ENST00000431357 PI4KBQ9UBF8 816 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 DAAM1Q9Y4D1 1078 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 UBR3Q6ZT12 1888 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 ESYT3A0FGR9 886 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 GOLGA6L10A6NI86 522 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 PPP1R12BO60237 982 aaPredicted RBP12.33□□□□□ -0.44
USP4-205ENST00000431357 CEP104O60308 925 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 NPM3O75607 178 aaKnown RBP12.33□□□□□ -0.44
USP4-205ENST00000431357 AKAP3O75969 853 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 CYP3A4P08684 503 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 HMGB2P26583 209 aaKnown RBP12.33□□□□□ -0.44
USP4-205ENST00000431357 STAT1P42224 750 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 SCNN1DP51172 638 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 DDR1Q08345 913 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 TRAF1Q13077 416 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 SLC15A2Q16348 729 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 DCAF17Q5H9S7 520 aaPredicted RBP12.33□□□□□ -0.44
USP4-205ENST00000431357 TMEM179Q6ZVK1 233 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 KLHL7Q8IXQ5 586 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 RASGEF1CQ8N431 466 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 ARFGAP2Q8N6H7 521 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 GMCL1P1Q8NEA9 526 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 LENG9Q96B70 501 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 GMCL1Q96IK5 515 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 ZDHHC15Q96MV8 337 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 FAM169AQ9Y6X4 670 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 ASTN1O14525 1302 aa12.33□□□□□ -0.44
USP4-205ENST00000431357 ZSCAN5CA6NGD5 496 aaPredicted RBP12.32□□□□□ -0.44
USP4-205ENST00000431357 G3V3G9 751 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 RAD21O60216 631 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 KRT14P02533 472 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 CRKP46108 304 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 GUCY2FP51841 1108 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 NFIAQ12857 509 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 SLC27A3Q5K4L6 730 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 DCAF8Q5TAQ9 597 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 TCERG1LQ5VWI1 586 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 PEX26Q7Z412 305 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 RBM46Q8TBY0 533 aaKnown RBP12.32□□□□□ -0.44
USP4-205ENST00000431357 SLC35C1Q96A29 364 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 MKNK1Q9BUB5 465 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 TMX4Q9H1E5 349 aaPredicted RBP12.32□□□□□ -0.44
USP4-205ENST00000431357 SLITRK6Q9H5Y7 841 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 DNAJC18Q9H819 358 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 SIX2Q9NPC8 291 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 DIS3Q9Y2L1 958 aaKnown RBP12.32□□□□□ -0.44
USP4-205ENST00000431357 RABGAP1Q9Y3P9 1069 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 MEIS1O00470 390 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 MSH4O15457 936 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 GCNT3O95395 438 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 NR1D1P20393 614 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 PSMC2P35998 433 aaKnown RBP12.32□□□□□ -0.44
USP4-205ENST00000431357 RNASE9P60153 205 aaKnown RBP12.32□□□□□ -0.44
USP4-205ENST00000431357 FKBP1AP62942 108 aaKnown RBP12.32□□□□□ -0.44
USP4-205ENST00000431357 HDLBPQ00341 1268 aaKnown RBP12.32□□□□□ -0.44
USP4-205ENST00000431357 ICA1Q05084 483 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 MTMR3Q13615 1198 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 HLTFQ14527 1009 aaKnown RBP eCLIP12.32□□□□□ -0.44
USP4-205ENST00000431357 SYDE2Q5VT97 1194 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 TATDN1Q6P1N9 297 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 MAATS1Q7Z4T9 603 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 CCDC26Q8TAB7 109 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 UIMC1Q96RL1 719 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 IDI2Q9BXS1 227 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 TUFT1Q9NNX1 390 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 GCNT4Q9P109 453 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 VAV3Q9UKW4 847 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 STXBP5LQ9Y2K9 1186 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 UBE4BO95155 1302 aa12.32□□□□□ -0.44
USP4-205ENST00000431357 FAM86B1E9PN63 330 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 F5H6K3 240 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 NDUFAB1O14561 156 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 FAM86B2P0C5J1 330 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 ZBTB48P10074 688 aaPredicted RBP12.31□□□□□ -0.44
USP4-205ENST00000431357 LMNB1P20700 586 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 MUTP22033 750 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 ALDH1B1P30837 517 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 ZNF76P36508 570 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms