RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SMAD3P84022 425 aaKnown RBP7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 FZD5Q13467 585 aa7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 LRRC32Q14392 662 aa7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 MCTP2Q6DN12 878 aa7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 LRSAM1Q6UWE0 723 aa7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 C11orf74Q86VG3 221 aa7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 ERCC4Q92889 916 aaPredicted RBP7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 TTC1Q99614 292 aa7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 OR10A5Q9H207 317 aa7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 IFT22Q9H7X7 185 aa7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 NOBOXO60393 691 aa7.98□□□□□ -1.13
CCDC88A-206ENST00000430086 BMP7P18075 431 aa7.98□□□□□ -1.13
CCDC88A-206ENST00000430086 PHC1P78364 1004 aa7.98□□□□□ -1.13
CCDC88A-206ENST00000430086 CT47A1Q5JQC4 288 aaPredicted RBP7.98□□□□□ -1.13
CCDC88A-206ENST00000430086 KANK2Q63ZY3 851 aa7.98□□□□□ -1.13
CCDC88A-206ENST00000430086 SPOCD1Q6ZMY3 1216 aa7.98□□□□□ -1.13
CCDC88A-206ENST00000430086 FILIP1Q7Z7B0 1213 aa7.98□□□□□ -1.13
CCDC88A-206ENST00000430086 MAML3Q96JK9 1138 aa7.98□□□□□ -1.13
CCDC88A-206ENST00000430086 TMEM168Q9H0V1 697 aa7.98□□□□□ -1.13
CCDC88A-206ENST00000430086 ZMAT4Q9H898 229 aa7.98□□□□□ -1.13
CCDC88A-206ENST00000430086 EMC7Q9NPA0 242 aa7.98□□□□□ -1.13
CCDC88A-206ENST00000430086 UBA6A0AVT1 1052 aaPredicted RBP7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 SASH1O94885 1247 aa7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 PRLP01236 227 aa7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 CD40P25942 277 aa7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 STRN3Q13033 797 aa7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 RGL3Q3MIN7 710 aa7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 TTC38Q5R3I4 469 aa7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 NUDT10Q8NFP7 164 aa7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 WDR48Q8TAF3 677 aa7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 NUDT11Q96G61 164 aa7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 LCORQ96JN0 433 aaPredicted RBP7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 FBXO10Q9UK96 956 aa7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 ADAMTS20P59510 1910 aa7.97□□□□□ -1.13
CCDC88A-206ENST00000430086 LOC105371045A0A1W2PR82 267 aa7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 NEMP1O14524 444 aa7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 BRINP1O60477 761 aa7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 CUTAO60888 179 aa7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 EYA4O95677 639 aa7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 CYP1A1P04798 512 aaPredicted RBP7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 CPEP16870 476 aa7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 POU3F3P20264 500 aaPredicted RBP7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 APEX1P27695 318 aaKnown RBP7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 CNGA1P29973 690 aa7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 ROM1Q03395 351 aa7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 Q6ZUG5 572 aa7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 KLHL36Q8N4N3 616 aa7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 AJUBAQ96IF1 538 aa7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 APOBEC2Q9Y235 224 aaKnown RBP7.96□□□□□ -1.14
CCDC88A-206ENST00000430086 MROH6A6NGR9 719 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 POLD1P28340 1107 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 LSP1P33241 339 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 GJA9P57773 515 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 NFKB2Q00653 900 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 SLC6A3Q01959 620 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 KIAA2012Q0VF49 1180 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 TERF2Q15554 542 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 WDR72Q3MJ13 1102 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 ATP13A4Q4VNC1 1196 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 NT5DC1Q5TFE4 455 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 PHYKPLQ8IUZ5 450 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 REXO1L1PQ8IX06 675 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 ZNF610Q8N9Z0 462 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 SYT8Q8NBV8 401 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 MBD6Q96DN6 1003 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 KATNBL1Q9H079 304 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 XYLT2Q9H1B5 865 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 PARD6AQ9NPB6 346 aa7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 USP36Q9P275 1121 aaKnown RBP7.95□□□□□ -1.14
CCDC88A-206ENST00000430086 SHROOM4Q9ULL8 1493 aa7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 CD83Q01151 205 aa7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 NFATC3Q12968 1075 aa7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 TOP3AQ13472 1001 aaPredicted RBP7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 SLFN12LQ6IEE8 588 aa7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 FAM124AQ86V42 546 aa7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 FAM177A1Q8N128 213 aaPredicted RBP7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 RTF1Q92541 710 aaKnown RBP7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 SLC5A5Q92911 643 aa7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 TUBGCP5Q96RT8 1024 aa7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 ZCCHC4Q9H5U6 513 aa7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 BARX1Q9HBU1 254 aaPredicted RBP7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 ADAM29Q9UKF5 820 aa7.94□□□□□ -1.14
CCDC88A-206ENST00000430086 ID4P47928 161 aa7.93□□□□□ -1.14
CCDC88A-206ENST00000430086 RGS3P49796 1198 aa7.93□□□□□ -1.14
CCDC88A-206ENST00000430086 DDB1Q16531 1140 aa7.93□□□□□ -1.14
CCDC88A-206ENST00000430086 TMEM200BQ69YZ2 307 aa7.93□□□□□ -1.14
CCDC88A-206ENST00000430086 TIGD7Q6NT04 549 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-206ENST00000430086 KANSL1Q7Z3B3 1105 aa7.93□□□□□ -1.14
CCDC88A-206ENST00000430086 C7orf31Q8N865 590 aa7.93□□□□□ -1.14
CCDC88A-206ENST00000430086 FEZF2Q8TBJ5 459 aa7.93□□□□□ -1.14
CCDC88A-206ENST00000430086 KRTAP9-9Q9BYP9 154 aa7.93□□□□□ -1.14
CCDC88A-206ENST00000430086 KRTAP9-4Q9BYQ2 154 aa7.93□□□□□ -1.14
CCDC88A-206ENST00000430086 ZDHHC5Q9C0B5 715 aa7.93□□□□□ -1.14
CCDC88A-206ENST00000430086 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.92□□□□□ -1.14
CCDC88A-206ENST00000430086 ULK1O75385 1050 aa7.92□□□□□ -1.14
CCDC88A-206ENST00000430086 ETV4P43268 484 aa7.92□□□□□ -1.14
CCDC88A-206ENST00000430086 MOGSQ13724 837 aa7.92□□□□□ -1.14
CCDC88A-206ENST00000430086 STAT4Q14765 748 aa7.92□□□□□ -1.14
CCDC88A-206ENST00000430086 MYBPC3Q14896 1274 aa7.92□□□□□ -1.14
CCDC88A-206ENST00000430086 EIF4HQ15056 248 aaKnown RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms