RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 RCAN1P53805 252 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 TSGA10IPQ3SY00 556 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 PRR16Q569H4 304 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 ABHD15Q6UXT9 468 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 RTN4RL1Q86UN2 441 aaPredicted RBP16.47■□□□□ 0.23
SDC1-204ENST00000429035 TEX2Q8IWB9 1127 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 METTL13Q8N6R0 699 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 PHKBQ93100 1093 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 PPP2R3CQ969Q6 453 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 OSMRQ99650 979 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 PLVAPQ9BX97 442 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 TMX1Q9H3N1 280 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 SAMM50Q9Y512 469 aa16.47■□□□□ 0.23
SDC1-204ENST00000429035 KDM3AQ9Y4C1 1321 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 IGLV3-22A0A075B6J6 115 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 PI4K2BG5E9Z4 385 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 ADAMTS3O15072 1205 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 NCK2O43639 380 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 SARSP49591 514 aaKnown RBP16.46■□□□□ 0.23
SDC1-204ENST00000429035 KIZQ2M2Z5 673 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 ZNF484Q5JVG2 852 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 NME8Q8N427 588 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 KLHL23Q8NBE8 558 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 SLC26A6Q9BXS9 759 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 ERVK-5Q9HDB9 667 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 C11orf16Q9NQ32 467 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 PLAGL2Q9UPG8 496 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 NOC2LQ9Y3T9 749 aaKnown RBP16.46■□□□□ 0.23
SDC1-204ENST00000429035 PCDHB7Q9Y5E2 793 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 SNX14Q9Y5W7 946 aa16.46■□□□□ 0.23
SDC1-204ENST00000429035 IGKV6D-21A0A0A0MT36 114 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 ESYT2A0FGR8 921 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 TBKBP1A7MCY6 615 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 LINC01565O15544 149 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 MGEA5O60502 916 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 TBX10O75333 385 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 VTNP04004 478 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 ITGB1P05556 798 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 GNA11P29992 359 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 DLX2Q07687 328 aaPredicted RBP16.45■□□□□ 0.22
SDC1-204ENST00000429035 CSPP1Q1MSJ5 1256 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 CCDC148Q8NFR7 591 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 POF1BQ8WVV4 589 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 TMEM40Q8WWA1 233 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 ADAM2Q99965 735 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 ZMYND12Q9H0C1 365 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 CDHR5Q9HBB8 845 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 VPS54Q9P1Q0 977 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 GABBR1Q9UBS5 961 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 AKT3Q9Y243 479 aa16.45■□□□□ 0.22
SDC1-204ENST00000429035 NID2Q14112 1375 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 CHMP2AO43633 222 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 GPR37L1O60883 481 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 PSAPP07602 524 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 CYP3A4P08684 503 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 IRS1P35568 1242 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 CLCN3P51790 818 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 CCT2P78371 535 aaKnown RBP16.44■□□□□ 0.22
SDC1-204ENST00000429035 ZP2Q05996 745 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 PKN1Q16512 942 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 ODR4Q5SWX8 454 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 ZNF746Q6NUN9 644 aaPredicted RBP16.44■□□□□ 0.22
SDC1-204ENST00000429035 ADGRD2Q7Z7M1 963 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 KIAA0319LQ8IZA0 1049 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 BBXQ8WY36 941 aaPredicted RBP16.44■□□□□ 0.22
SDC1-204ENST00000429035 P2RX5Q93086 422 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 SCLT1Q96NL6 688 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 TBC1D22BQ9NU19 505 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 CD207Q9UJ71 328 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 ST3GAL5Q9UNP4 418 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 PCDHGC5Q9Y5F6 944 aa16.44■□□□□ 0.22
SDC1-204ENST00000429035 GPR182O15218 404 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 DHX15O43143 795 aaKnown RBP16.43■□□□□ 0.22
SDC1-204ENST00000429035 PRPF3O43395 683 aaKnown RBP16.43■□□□□ 0.22
SDC1-204ENST00000429035 MBTPS2O43462 519 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 C22orf31O95567 290 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 ALADP13716 330 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 ATP4AP20648 1035 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 RPS6KB1P23443 525 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 DNAJB1P25685 340 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 HSPA4P34932 840 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 LTBRP36941 435 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 SMAD4Q13485 552 aaKnown RBP16.43■□□□□ 0.22
SDC1-204ENST00000429035 COL19A1Q14993 1142 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 MCTP2Q6DN12 878 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 RBM23Q86U06 439 aaKnown RBP16.43■□□□□ 0.22
SDC1-204ENST00000429035 FAM228AQ86W67 206 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 ADHFE1Q8IWW8 467 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 SMAP1Q8IYB5 467 aaPredicted RBP16.43■□□□□ 0.22
SDC1-204ENST00000429035 SPPL3Q8TCT6 385 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 BICD2Q8TD16 824 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 ZNF668Q96K58 619 aaPredicted RBP16.43■□□□□ 0.22
SDC1-204ENST00000429035 C1orf112Q9NSG2 853 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 HCSTQ9UBK5 93 aa16.43■□□□□ 0.22
SDC1-204ENST00000429035 ZBTB42B2RXF5 422 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 DCXO43602 365 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 FGFR1P11362 822 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 NRIP1P48552 1158 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 CTC1Q2NKJ3 1217 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 NAALADL2Q58DX5 795 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms