RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 CLRN3Q8NCR9 226 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 WDR48Q8TAF3 677 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 CALML6Q8TD86 181 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 ZNF526Q8TF50 670 aaPredicted RBP5.72□□□□□ -1.49
USP40-204ENST00000427947 TUBGCP5Q96RT8 1024 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 FOXB1Q99853 325 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 MSRAQ9UJ68 235 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 KDM1AO60341 852 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 ECE1P42892 770 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 RGS3P49796 1198 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 GUCY2FP51841 1108 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 SESN3P58005 492 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 IL13RA1P78552 427 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 ROM1Q03395 351 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 DLX2Q07687 328 aaPredicted RBP5.71□□□□□ -1.5
USP40-204ENST00000427947 ADCY1Q08828 1119 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 PHYKPLQ8IUZ5 450 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 RPUSD2Q8IZ73 545 aaKnown RBP5.71□□□□□ -1.5
USP40-204ENST00000427947 ADGRG2Q8IZP9 1017 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 DACT3Q96B18 629 aaPredicted RBP5.71□□□□□ -1.5
USP40-204ENST00000427947 MAML3Q96JK9 1138 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 BTBD2Q9BX70 525 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 IRF2BPLQ9H1B7 796 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 POFUT1Q9H488 388 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 VTA1Q9NP79 307 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 KCND1Q9NSA2 647 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 SPATA6Q9NWH7 488 aaPredicted RBP5.71□□□□□ -1.5
USP40-204ENST00000427947 SLC5A4Q9NY91 659 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 NTMQ9P121 344 aa5.71□□□□□ -1.5
USP40-204ENST00000427947 NOC2LQ9Y3T9 749 aaKnown RBP5.71□□□□□ -1.5
USP40-204ENST00000427947 PHLDB1Q86UU1 1377 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 DISP3Q9P2K9 1392 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 ALG1L2C9J202 215 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 APOL3O95236 402 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 RPL13P26373 211 aaKnown RBP5.7□□□□□ -1.5
USP40-204ENST00000427947 MLLT6P55198 1093 aaPredicted RBP5.7□□□□□ -1.5
USP40-204ENST00000427947 VMACQ2NL98 169 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 PRR31Q5SQ13 230 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 CIAPIN1Q6FI81 312 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 SLFN12LQ6IEE8 588 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 TRMT10BQ6PF06 316 aaKnown RBP5.7□□□□□ -1.5
USP40-204ENST00000427947 DPP8Q6V1X1 898 aaPredicted RBP5.7□□□□□ -1.5
USP40-204ENST00000427947 NECAB2Q7Z6G3 386 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 RASSF3Q86WH2 238 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 ZCCHC14Q8WYQ9 949 aaKnown RBP5.7□□□□□ -1.5
USP40-204ENST00000427947 ZNF496Q96IT1 587 aaPredicted RBP5.7□□□□□ -1.5
USP40-204ENST00000427947 ZDHHC5Q9C0B5 715 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 OR10A5Q9H207 317 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 SEMA4AQ9H3S1 761 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 TOPORSQ9NS56 1045 aaPredicted RBP5.7□□□□□ -1.5
USP40-204ENST00000427947 HOMER2Q9NSB8 354 aa5.7□□□□□ -1.5
USP40-204ENST00000427947 USP36Q9P275 1121 aaKnown RBP5.7□□□□□ -1.5
USP40-204ENST00000427947 A0A1B0GTL3 188 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 DDX3XO00571 662 aaKnown RBP eCLIP5.69□□□□□ -1.5
USP40-204ENST00000427947 FFAR3O14843 346 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 PRKD3O94806 890 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 PRPF6O94906 941 aaKnown RBP5.69□□□□□ -1.5
USP40-204ENST00000427947 ZNF28P17035 718 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 MYBPC3Q14896 1274 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 WDR72Q3MJ13 1102 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 TCERG1LQ5VWI1 586 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 TIGD7Q6NT04 549 aaPredicted RBP5.69□□□□□ -1.5
USP40-204ENST00000427947 FRMD7Q6ZUT3 714 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 TMEM151BQ8IW70 566 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 CNTD1Q8N815 330 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 MYL10Q9BUA6 226 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 L2HGDHQ9H9P8 463 aa5.69□□□□□ -1.5
USP40-204ENST00000427947 SH3D21A4FU49 640 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 H0Y858 1186 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 KATNA1O75449 491 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 COL6A1P12109 1028 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 APEX1P27695 318 aaKnown RBP5.68□□□□□ -1.5
USP40-204ENST00000427947 IL13P35225 146 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 ADCY8P40145 1251 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 CAP1Q01518 475 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 MTMR1Q13613 665 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 ESPNLQ6ZVH7 1005 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 ANKRD13AQ8IZ07 590 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 LINC01356Q8N9X3 169 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 FERMT2Q96AC1 680 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 MTMR8Q96EF0 704 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 AHCYL2Q96HN2 611 aaKnown RBP5.68□□□□□ -1.5
USP40-204ENST00000427947 PUS7LQ9H0K6 701 aaKnown RBP5.68□□□□□ -1.5
USP40-204ENST00000427947 C14orf119Q9NWQ9 140 aa5.68□□□□□ -1.5
USP40-204ENST00000427947 ST20-MTHFSA0A0A6YYL1 179 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 ELL2O00472 640 aaPredicted RBP5.67□□□□□ -1.5
USP40-204ENST00000427947 PPM1GO15355 546 aaPredicted RBP5.67□□□□□ -1.5
USP40-204ENST00000427947 KNG1P01042 644 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 CHGBP05060 677 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 SARSP49591 514 aaKnown RBP5.67□□□□□ -1.5
USP40-204ENST00000427947 CD83Q01151 205 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 ADCY2Q08462 1091 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 ITKQ08881 620 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 FAPQ12884 760 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 NOLC1Q14978 699 aaKnown RBP eCLIP5.67□□□□□ -1.5
USP40-204ENST00000427947 STILQ15468 1287 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 ZBTB41Q5SVQ8 909 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 KANK2Q63ZY3 851 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 MCTP2Q6DN12 878 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 KIAA1841Q6NSI8 718 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms