RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CDC27P30260 824 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 PBX3P40426 434 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 SARSP49591 514 aaKnown RBP9.24□□□□□ -0.93
VIM-202ENST00000421459 EXOSC10Q01780 885 aaKnown RBP9.24□□□□□ -0.93
VIM-202ENST00000421459 KIZQ2M2Z5 673 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 ADCK5Q3MIX3 580 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 SPOUT1Q5T280 376 aaKnown RBP9.24□□□□□ -0.93
VIM-202ENST00000421459 SWSAP1Q6NVH7 229 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 APOA5Q6Q788 366 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 RASEFQ8IZ41 740 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 EFHBQ8N7U6 833 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 SMRP1Q8NCR6 262 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 PRSS33Q8NF86 280 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 EDAQ92838 391 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 RPGRIP1Q96KN7 1286 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 MTA3Q9BTC8 594 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 FTHL17Q9BXU8 183 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 UPF3BQ9BZI7 483 aaKnown RBP9.24□□□□□ -0.93
VIM-202ENST00000421459 TLE6Q9H808 572 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 ANO2Q9NQ90 1003 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 FAM217BQ9NTX9 383 aaPredicted RBP9.24□□□□□ -0.93
VIM-202ENST00000421459 TYW1Q9NV66 732 aaKnown RBP9.24□□□□□ -0.93
VIM-202ENST00000421459 CDH22Q9UJ99 828 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 ST3GAL5Q9UNP4 418 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 USP15Q9Y4E8 981 aaPredicted RBP9.24□□□□□ -0.93
VIM-202ENST00000421459 PCDHB7Q9Y5E2 793 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 SQORQ9Y6N5 450 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 ATG2AQ2TAZ0 1938 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 NFASCO94856 1347 aa9.24□□□□□ -0.93
VIM-202ENST00000421459 NLRC5Q86WI3 1866 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 LOC730098B7Z3J9 87 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 DHX15O43143 795 aaKnown RBP9.23□□□□□ -0.93
VIM-202ENST00000421459 FGF18O76093 207 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 SP100P23497 879 aaPredicted RBP9.23□□□□□ -0.93
VIM-202ENST00000421459 ADD1P35611 737 aaKnown RBP9.23□□□□□ -0.93
VIM-202ENST00000421459 ZNF76P36508 570 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 CLK2P49760 499 aaKnown RBP9.23□□□□□ -0.93
VIM-202ENST00000421459 ADCY7P51828 1080 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 LLGL2Q6P1M3 1020 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 PDXDC2PQ6P474 469 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 LRRC55Q6ZSA7 311 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 SGMS1Q86VZ5 419 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 FAM228AQ86W67 206 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 PLA2G4DQ86XP0 818 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 ATP8B4Q8TF62 1192 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 NEK1Q96PY6 1258 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 OSMRQ99650 979 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 CWH43Q9H720 699 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 RGS18Q9NS28 235 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 DMDP11532 3685 aa9.23□□□□□ -0.93
VIM-202ENST00000421459 MYO7AQ13402 2215 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 IGLV3-22A0A075B6J6 115 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 DENND3A2RUS2 1198 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 TMEM221A6NGB7 291 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 GOLGA8AA7E2F4 631 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 GOLGA8BA8MQT2 603 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 HIDE1A8MVS5 230 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 C9IYK1 514 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 M0R296 226 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 ZBTB43O43298 467 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 HBP1O60381 514 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 GPR32O75388 356 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 C22orf31O95567 290 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 FGFR4P22455 802 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 SREBF1P36956 1147 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 CLCN3P51790 818 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 ZXDAP98168 799 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 COASYQ13057 564 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 RTN1Q16799 776 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 NAALADL2Q58DX5 795 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 PLPP4Q5VZY2 271 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 SYNE3Q6ZMZ3 975 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 TRIM67Q6ZTA4 783 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 CKAP2LQ8IYA6 745 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 THNSL1Q8IYQ7 743 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 NME8Q8N427 588 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 METTL13Q8N6R0 699 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 COLGALT1Q8NBJ5 622 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 RASGRP4Q8TDF6 673 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 PBXIP1Q96AQ6 731 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 MFSD14AQ96MC6 490 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 POP1Q99575 1024 aaKnown RBP9.22□□□□□ -0.93
VIM-202ENST00000421459 ZNF302Q9NR11 478 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 RNF19AQ9NV58 838 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 BARHL2Q9NY43 387 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 NAP1L2Q9ULW6 460 aaPredicted RBP9.22□□□□□ -0.93
VIM-202ENST00000421459 MYO15AQ9UKN7 3530 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 KDM3AQ9Y4C1 1321 aa9.22□□□□□ -0.93
VIM-202ENST00000421459 RALGAPA2Q2PPJ7 1873 aa9.21□□□□□ -0.93
VIM-202ENST00000421459 KLF18A0A0U1RQI7 1052 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 IPO5O00410 1097 aaKnown RBP9.21□□□□□ -0.94
VIM-202ENST00000421459 FSCN2O14926 492 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 EDIL3O43854 480 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 CSDE1O75534 798 aaKnown RBP9.21□□□□□ -0.94
VIM-202ENST00000421459 FOSP01100 380 aaPredicted RBP9.21□□□□□ -0.94
VIM-202ENST00000421459 FAM189BP81408 668 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 DSC3Q14574 896 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 DUSP6Q16828 381 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 ZNF484Q5JVG2 852 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 FAM160B1Q5W0V3 765 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms