RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 MED24O75448 989 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 F13A1P00488 732 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 IQCF3P0C7M6 154 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 ZSCAN22P10073 491 aaPredicted RBP13.98□□□□□ -0.17
SKA1-203ENST00000417656 ACRP10323 421 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 KLRC1P26715 233 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 SF3A1Q15459 793 aaKnown RBP13.98□□□□□ -0.17
SKA1-203ENST00000417656 ANO5Q75V66 913 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 TPH2Q8IWU9 490 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 DNAJB3Q8WWF6 145 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 ZSCAN16Q9H4T2 348 aaPredicted RBP13.98□□□□□ -0.17
SKA1-203ENST00000417656 ZSWIM4Q9H7M6 989 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 NRBP2Q9NSY0 501 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 PCDHA2Q9Y5H9 948 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 EVPLQ92817 2033 aa13.98□□□□□ -0.17
SKA1-203ENST00000417656 VWA3AA6NCI4 1184 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 CAND2O75155 1236 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 SLITRK3O94933 977 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 BMP15O95972 392 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 YWHABP31946 246 aaKnown RBP13.97□□□□□ -0.17
SKA1-203ENST00000417656 BMP8BP34820 402 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 CLCN3P51790 818 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 MBTPS1Q14703 1052 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 TARBP2Q15633 366 aaKnown RBP13.97□□□□□ -0.17
SKA1-203ENST00000417656 C9orf50Q5SZB4 431 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 DTHD1Q6ZMT9 781 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 DEFB128Q7Z7B8 93 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 C4orf19Q8IY42 314 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 LRRC71Q8N4P6 559 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 IGSF22Q8N9C0 903 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 ERMNQ8TAM6 284 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 VWCEQ96DN2 955 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 USP28Q96RU2 1077 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 HSD17B14Q9BPX1 270 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 NIFKQ9BYG3 293 aaKnown RBP13.97□□□□□ -0.17
SKA1-203ENST00000417656 IL23AQ9NPF7 189 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 LRWD1Q9UFC0 647 aa13.97□□□□□ -0.17
SKA1-203ENST00000417656 SMIM35A0A1B0GVV1 85 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 RSPH10B2B2RC85 870 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 ZBTB39O15060 712 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 NBNO60934 754 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 RSPH10BP0C881 870 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 SPATA31C1P0DKV0 1188 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 RFC2P35250 354 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 NPEPPSP55786 919 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 MRPS6P82932 125 aaKnown RBP13.96□□□□□ -0.17
SKA1-203ENST00000417656 CEBPZQ03701 1054 aaKnown RBP13.96□□□□□ -0.17
SKA1-203ENST00000417656 MGAT3Q09327 533 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 TBC1D8BQ0IIM8 1120 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 TMEM62Q0P6H9 643 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 GPNMBQ14956 572 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 PTPAQ15257 358 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 FOXD4L6Q3SYB3 417 aaPredicted RBP13.96□□□□□ -0.17
SKA1-203ENST00000417656 HAUS3Q68CZ6 603 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 POTEGQ6S5H5 508 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 FOXD4L3Q6VB84 417 aaPredicted RBP13.96□□□□□ -0.17
SKA1-203ENST00000417656 C16orf59Q7L2K0 433 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 RSPH3Q86UC2 560 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 METTL13Q8N6R0 699 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 ZNF579Q8NAF0 562 aaKnown RBP13.96□□□□□ -0.17
SKA1-203ENST00000417656 SNX29Q8TEQ0 813 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 CEP89Q96ST8 783 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 PPP1R16BQ96T49 567 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.96□□□□□ -0.172e-6■■■■□ 23.3
SKA1-203ENST00000417656 RAB34Q9BZG1 259 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 TUFT1Q9NNX1 390 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 CYP26B1Q9NR63 512 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 BMP2KQ9NSY1 1161 aaPredicted RBP13.96□□□□□ -0.17
SKA1-203ENST00000417656 CDY2AQ9Y6F7 541 aa13.96□□□□□ -0.17
SKA1-203ENST00000417656 TET1Q8NFU7 2136 aa13.96□□□□□ -0.18
SKA1-203ENST00000417656 LOXHD1Q8IVV2 1947 aa13.96□□□□□ -0.18
SKA1-203ENST00000417656 A0A087WWV3 80 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 LYPLA2O95372 231 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 PDIA4P13667 645 aaKnown RBP13.95□□□□□ -0.18
SKA1-203ENST00000417656 RPA1P27694 616 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 CCT6AP40227 531 aaKnown RBP13.95□□□□□ -0.18
SKA1-203ENST00000417656 GRIN1Q05586 938 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 SHHQ15465 462 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 XKR9Q5GH70 373 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 ARL6IP4Q66PJ3 421 aaKnown RBP13.95□□□□□ -0.18
SKA1-203ENST00000417656 PSRC1Q6PGN9 363 aaPredicted RBP13.95□□□□□ -0.18
SKA1-203ENST00000417656 RPAINQ86UA6 219 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 CATSPER3Q86XQ3 398 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 TDHQ8IZJ6 230 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 LINC01465Q8N7H1 131 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 CEP170P1Q96L14 293 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 POLR3CQ9BUI4 534 aaPredicted RBP13.95□□□□□ -0.18
SKA1-203ENST00000417656 OSBPL7Q9BZF2 842 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 TRPV2Q9Y5S1 764 aa13.95□□□□□ -0.18
SKA1-203ENST00000417656 MAGEB2O15479 319 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 BRD1O95696 1058 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 CHRNA1P02708 482 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 VTNP04004 478 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 RPLP2P05387 115 aaKnown RBP13.94□□□□□ -0.18
SKA1-203ENST00000417656 PFKMP08237 780 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 MARCKSP29966 332 aaPredicted RBP13.94□□□□□ -0.18
SKA1-203ENST00000417656 CDC25AP30304 524 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 CLCN6P51797 869 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 DRP2Q13474 957 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 PDIA5Q14554 519 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms