RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 CNOT8Q9UFF9 292 aaKnown RBP10.69□□□□□ -0.7
CD44-206ENST00000415148 STXBP5LQ9Y2K9 1186 aa10.69□□□□□ -0.7
CD44-206ENST00000415148 DIS3Q9Y2L1 958 aaKnown RBP10.69□□□□□ -0.7
CD44-206ENST00000415148 H0YGN5 161 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 PGRMC1O00264 195 aaKnown RBP10.68□□□□□ -0.7
CD44-206ENST00000415148 FOSP01100 380 aaPredicted RBP10.68□□□□□ -0.7
CD44-206ENST00000415148 HLA-DOAP06340 250 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 ZBTB48P10074 688 aaPredicted RBP10.68□□□□□ -0.7
CD44-206ENST00000415148 ACTN1P12814 892 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 SLC9A1P19634 815 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 IBSPP21815 317 aaPredicted RBP10.68□□□□□ -0.7
CD44-206ENST00000415148 SLC16A2P36021 539 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 JAM2P57087 298 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 SPIRE1Q08AE8 756 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 BIRC3Q13489 604 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 EPHA7Q15375 998 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 NFIL3Q16649 462 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 RNF187Q5TA31 235 aaPredicted RBP10.68□□□□□ -0.7
CD44-206ENST00000415148 RUFY4Q6ZNE9 571 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 MAATS1Q7Z4T9 603 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 FMNL3Q8IVF7 1028 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 TPCN2Q8NHX9 752 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 ETNPPLQ8TBG4 499 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 CEP89Q96ST8 783 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 AP1M1Q9BXS5 423 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 TTC7AQ9ULT0 858 aaPredicted RBP10.68□□□□□ -0.7
CD44-206ENST00000415148 DAAM1Q9Y4D1 1078 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 NFS1Q9Y697 457 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 E7EVH7 732 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 FSBPO95073 299 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 H2AFZP0C0S5 128 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 FERP16591 822 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 HSD17B3P37058 310 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 GTF2IP78347 998 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 SF3A3Q12874 501 aaKnown RBP eCLIP10.68□□□□□ -0.7
CD44-206ENST00000415148 QRICH1Q2TAL8 776 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 SPDYCQ5MJ68 293 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 H2AFVQ71UI9 128 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 SP8Q8IXZ3 490 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 CCDC26Q8TAB7 109 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 DDX4Q9NQI0 724 aaKnown RBP10.68□□□□□ -0.7
CD44-206ENST00000415148 USP40Q9NVE5 1235 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 NYAP2Q9P242 653 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 PCDHA1Q9Y5I3 950 aa10.68□□□□□ -0.7
CD44-206ENST00000415148 LRRC37AA6NMS7 1700 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 LTBP1Q14766 1721 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 USP17L15C9J2P7 530 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 USP17L13C9JLJ4 530 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 USP17L11C9JVI0 530 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 USP17L18D6R9N7 530 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 USP17L22D6RA61 530 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 USP17L17D6RBQ6 530 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 USP17L19D6RCP7 530 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 USP17L20D6RJB6 530 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 GCOM1H8Y6P7 765 aaPredicted RBP10.67□□□□□ -0.7
CD44-206ENST00000415148 MEIS2O14770 477 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 CEP104O60308 925 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 KIAA0754O94854 1291 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 MYZAPP0CAP1 466 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 SPATA31C1P0DKV0 1188 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 ITGA4P13612 1032 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 HOXD13P35453 343 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 GSCP56915 257 aaPredicted RBP10.67□□□□□ -0.7
CD44-206ENST00000415148 USP17L24Q0WX57 530 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 CLUL1Q15846 466 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 PPP2R5EQ16537 467 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 USP17L6PQ6QN14 398 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 HHIPL2Q6UWX4 724 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 KCTD1Q719H9 257 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 CLEC10AQ8IUN9 316 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 TEX2Q8IWB9 1127 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 SEC14L1Q92503 715 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 JPH2Q9BR39 696 aaPredicted RBP10.67□□□□□ -0.7
CD44-206ENST00000415148 POLR3CQ9BUI4 534 aaPredicted RBP10.67□□□□□ -0.7
CD44-206ENST00000415148 BCAS3Q9H6U6 928 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 POTEFA5A3E0 1075 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 C6orf229H3BNL8 230 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 SART1O43290 800 aaKnown RBP10.67□□□□□ -0.7
CD44-206ENST00000415148 FAM107AO95990 144 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 POTEIP0CG38 1075 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 GAP43P17677 238 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 CIITAP33076 1130 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 USP8P40818 1118 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 MMP14P50281 582 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 ARHGAP4P98171 946 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 BYSLQ13895 437 aaKnown RBP10.67□□□□□ -0.7
CD44-206ENST00000415148 AGBL2Q5U5Z8 902 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 POTEGQ6S5H5 508 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 POTEEQ6S8J3 1075 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 C6orf89Q6UWU4 347 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 PEX26Q7Z412 305 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 SFR1Q86XK3 245 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 METTL13Q8N6R0 699 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 RBM46Q8TBY0 533 aaKnown RBP10.67□□□□□ -0.7
CD44-206ENST00000415148 MYCBPQ99417 103 aaPredicted RBP10.67□□□□□ -0.7
CD44-206ENST00000415148 REEP2Q9BRK0 252 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 ZHX3Q9H4I2 956 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 SIX2Q9NPC8 291 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 OLFML3Q9NRN5 406 aa10.67□□□□□ -0.7
CD44-206ENST00000415148 AJAP1Q9UKB5 411 aaPredicted RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms