RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 MGAT3Q09327 533 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 TMEM266Q2M3C6 531 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 OTOP2Q7RTS6 562 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 NME8Q8N427 588 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 WRAP73Q9P2S5 460 aaPredicted RBP24.35■■□□□ 1.49
CLN3-207ENST00000395653 SLITRK3O94933 977 aa24.34■■□□□ 1.49
CLN3-207ENST00000395653 CHRNA1P02708 482 aa24.34■■□□□ 1.49
CLN3-207ENST00000395653 PRPHP41219 470 aa24.34■■□□□ 1.49
CLN3-207ENST00000395653 TECP42680 631 aa24.34■■□□□ 1.49
CLN3-207ENST00000395653 FXR2P51116 673 aaKnown RBP eCLIP24.34■■□□□ 1.49
CLN3-207ENST00000395653 CYP4A11Q02928 519 aa24.34■■□□□ 1.49
CLN3-207ENST00000395653 IER5Q5VY09 327 aa24.34■■□□□ 1.49
CLN3-207ENST00000395653 ANO5Q75V66 913 aa24.34■■□□□ 1.49
CLN3-207ENST00000395653 FERMT3Q86UX7 667 aa24.34■■□□□ 1.49
CLN3-207ENST00000395653 DDX11L8A8MPP1 907 aa24.33■■□□□ 1.49
CLN3-207ENST00000395653 STX6O43752 255 aa24.33■■□□□ 1.49
CLN3-207ENST00000395653 LYPLA2O95372 231 aa24.33■■□□□ 1.49
CLN3-207ENST00000395653 TBC1D8BQ0IIM8 1120 aa24.33■■□□□ 1.49
CLN3-207ENST00000395653 CTTNQ14247 550 aaKnown RBP24.33■■□□□ 1.49
CLN3-207ENST00000395653 MTERF2Q49AM1 385 aa24.33■■□□□ 1.49
CLN3-207ENST00000395653 CNKSR3Q6P9H4 555 aa24.33■■□□□ 1.49
CLN3-207ENST00000395653 KIAA0319LQ8IZA0 1049 aa24.33■■□□□ 1.49
CLN3-207ENST00000395653 MTMR6Q9Y217 621 aa24.33■■□□□ 1.49
CLN3-207ENST00000395653 TMEM150BA6NC51 233 aa24.32■■□□□ 1.48
CLN3-207ENST00000395653 BAIAP3O94812 1187 aa24.32■■□□□ 1.48
CLN3-207ENST00000395653 FXR1P51114 621 aaKnown RBP eCLIP24.32■■□□□ 1.48
CLN3-207ENST00000395653 ATP2C1P98194 919 aaPredicted RBP24.32■■□□□ 1.48
CLN3-207ENST00000395653 TPH2Q8IWU9 490 aa24.32■■□□□ 1.48
CLN3-207ENST00000395653 LINC01465Q8N7H1 131 aa24.32■■□□□ 1.48
CLN3-207ENST00000395653 CEP89Q96ST8 783 aa24.32■■□□□ 1.48
CLN3-207ENST00000395653 CXXC1Q9P0U4 656 aaPredicted RBP24.32■■□□□ 1.48
CLN3-207ENST00000395653 PPME1Q9Y570 386 aa24.32■■□□□ 1.48
CLN3-207ENST00000395653 CDY2AQ9Y6F7 541 aa24.32■■□□□ 1.48
CLN3-207ENST00000395653 KDM3AQ9Y4C1 1321 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 TET1Q8NFU7 2136 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 M0QZ92 97 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 PDIA4P13667 645 aaKnown RBP24.31■■□□□ 1.48
CLN3-207ENST00000395653 YWHABP31946 246 aaKnown RBP24.31■■□□□ 1.48
CLN3-207ENST00000395653 RESTQ13127 1097 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 PLEKHG4Q58EX7 1191 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 EFCAB12Q6NXP0 572 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 OTUD6AQ7L8S5 288 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 METTL13Q8N6R0 699 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 ERMNQ8TAM6 284 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 RAB34Q9BZG1 259 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 CYP26B1Q9NR63 512 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 TRPV2Q9Y5S1 764 aa24.31■■□□□ 1.48
CLN3-207ENST00000395653 SOX1O00570 391 aaPredicted RBP24.3■■□□□ 1.48
CLN3-207ENST00000395653 TMOD1P28289 359 aa24.3■■□□□ 1.48
CLN3-207ENST00000395653 PDIA5Q14554 519 aa24.3■■□□□ 1.48
CLN3-207ENST00000395653 PLA2G4FQ68DD2 849 aa24.3■■□□□ 1.48
CLN3-207ENST00000395653 IGSF22Q8N9C0 903 aa24.3■■□□□ 1.48
CLN3-207ENST00000395653 TUFT1Q9NNX1 390 aa24.3■■□□□ 1.48
CLN3-207ENST00000395653 SQORQ9Y6N5 450 aa24.3■■□□□ 1.48
CLN3-207ENST00000395653 SIP14410 1827 aa24.3■■□□□ 1.48
CLN3-207ENST00000395653 IGKV6-21A0A0C4DH24 114 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 ZBBXA8MT70 800 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 BMP15O95972 392 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 CLCN3P51790 818 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 TMEM62Q0P6H9 643 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 FBXO47Q5MNV8 452 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 DTHD1Q6ZMT9 781 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 DBF4BQ8NFT6 615 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 MAP7D2Q96T17 732 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 JPH2Q9BR39 696 aaPredicted RBP24.29■■□□□ 1.48
CLN3-207ENST00000395653 SH2D3AQ9BRG2 576 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 POLR3CQ9BUI4 534 aaPredicted RBP24.29■■□□□ 1.48
CLN3-207ENST00000395653 CELF4Q9BZC1 486 aaKnown RBP24.29■■□□□ 1.48
CLN3-207ENST00000395653 STK24Q9Y6E0 443 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 SLC4A7Q9Y6M7 1214 aa24.29■■□□□ 1.48
CLN3-207ENST00000395653 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.28■■□□□ 1.48
CLN3-207ENST00000395653 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.28■■□□□ 1.48
CLN3-207ENST00000395653 EFCAB14O75071 495 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 MAFO75444 373 aaPredicted RBP24.28■■□□□ 1.48
CLN3-207ENST00000395653 SPATA31C1P0DKV0 1188 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 SMAD3P84022 425 aaKnown RBP24.28■■□□□ 1.48
CLN3-207ENST00000395653 LPIN1Q14693 890 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 ARL6IP4Q66PJ3 421 aaKnown RBP24.28■■□□□ 1.48
CLN3-207ENST00000395653 HAUS3Q68CZ6 603 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 CATSPER3Q86XQ3 398 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 EXOC8Q8IYI6 725 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 ZNF710Q8N1W2 664 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 LRRC71Q8N4P6 559 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 SEPT8Q92599 483 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 APBB2Q92870 758 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 CEP170P1Q96L14 293 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 OSBPL7Q9BZF2 842 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 ZSCAN16Q9H4T2 348 aaPredicted RBP24.28■■□□□ 1.48
CLN3-207ENST00000395653 LRWD1Q9UFC0 647 aa24.28■■□□□ 1.48
CLN3-207ENST00000395653 ABHD14A-ACY1A0A1B0GW23 586 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 MED24O75448 989 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 GHRP10912 638 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 MUTP22033 750 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 RPA1P27694 616 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 NPEPPSP55786 919 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 IKBKEQ14164 716 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 TCTN1Q2MV58 587 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 USP38Q8NB14 1042 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 LRCH3Q96II8 777 aa24.27■■□□□ 1.48
CLN3-207ENST00000395653 IFIH1Q9BYX4 1025 aaKnown RBP24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms