RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 VAV3Q9UKW4 847 aa20.58■□□□□ 0.89
CBX1-202ENST00000393408 PLAAQ9Y263 795 aa20.58■□□□□ 0.89
CBX1-202ENST00000393408 PGRMC1O00264 195 aaKnown RBP20.58■□□□□ 0.88
CBX1-202ENST00000393408 NR1D1P20393 614 aa20.58■□□□□ 0.88
CBX1-202ENST00000393408 SNAP25P60880 206 aa20.58■□□□□ 0.88
CBX1-202ENST00000393408 TCERG1LQ5VWI1 586 aa20.58■□□□□ 0.88
CBX1-202ENST00000393408 BCAS3Q9H6U6 928 aa20.58■□□□□ 0.88
CBX1-202ENST00000393408 GCNT4Q9P109 453 aa20.58■□□□□ 0.88
CBX1-202ENST00000393408 STXBP5LQ9Y2K9 1186 aa20.58■□□□□ 0.88
CBX1-202ENST00000393408 A0A0A6YYK5 440 aaPredicted RBP20.57■□□□□ 0.88
CBX1-202ENST00000393408 MSH4O15457 936 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 ZEB2O60315 1214 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 CERKLQ49MI3 558 aaPredicted RBP20.57■□□□□ 0.88
CBX1-202ENST00000393408 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.57■□□□□ 0.882e-8■■■□□ 16.3
CBX1-202ENST00000393408 BHMT2Q9H2M3 363 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 NOC2LQ9Y3T9 749 aaKnown RBP20.57■□□□□ 0.88
CBX1-202ENST00000393408 SAMM50Q9Y512 469 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 ANKRD31Q8N7Z5 1873 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 GTPBP10A4D1E9 387 aaKnown RBP20.57■□□□□ 0.88
CBX1-202ENST00000393408 HMGB1P1B2RPK0 211 aaPredicted RBP20.57■□□□□ 0.88
CBX1-202ENST00000393408 DDX3XO00571 662 aaKnown RBP eCLIP20.57■□□□□ 0.884e-6■□□□□ 11.2
CBX1-202ENST00000393408 NDUFAB1O14561 156 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 FOSP01100 380 aaPredicted RBP20.57■□□□□ 0.88
CBX1-202ENST00000393408 H2AFZP0C0S5 128 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 CIITAP33076 1130 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 LSP1P33241 339 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 MMP14P50281 582 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 HLTFQ14527 1009 aaKnown RBP eCLIP20.57■□□□□ 0.88
CBX1-202ENST00000393408 PTPROQ16827 1216 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 H2AFVQ71UI9 128 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 VPS36Q86VN1 386 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 POLR3CQ9BUI4 534 aaPredicted RBP20.57■□□□□ 0.88
CBX1-202ENST00000393408 INTUQ9ULD6 942 aa20.57■□□□□ 0.88
CBX1-202ENST00000393408 SPDYE3A6NKU9 549 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 GCNT3O95395 438 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 CRKP46108 304 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 CYP4A11Q02928 519 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 KCNA1Q09470 495 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 GJB7Q6PEY0 223 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 LRIG3Q6UXM1 1119 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 FBXO11Q86XK2 927 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 RASGEF1CQ8N431 466 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 BORCS6Q96GS4 357 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 AP1M1Q9BXS5 423 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 SUCLA2Q9P2R7 463 aaPredicted RBP20.56■□□□□ 0.88
CBX1-202ENST00000393408 CLIC2O15247 247 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 SART1O43290 800 aaKnown RBP20.56■□□□□ 0.88
CBX1-202ENST00000393408 TBCAO75347 108 aaKnown RBP20.56■□□□□ 0.88
CBX1-202ENST00000393408 EYA4O95677 639 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 GUCY1A3Q02108 690 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 USH1GQ495M9 461 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 PEX26Q7Z412 305 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 MAATS1Q7Z4T9 603 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 LMBR1Q8WVP7 490 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 TMBIM4Q9HC24 238 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 POLD4Q9HCU8 107 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 OLFML3Q9NRN5 406 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 NRXN2Q9P2S2 1712 aa20.56■□□□□ 0.88
CBX1-202ENST00000393408 DDTLA6NHG4 134 aaPredicted RBP20.55■□□□□ 0.88
CBX1-202ENST00000393408 CCDC188H7C350 402 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 TGFB1I1O43294 461 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 HSD17B3P37058 310 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 CACNB3P54284 484 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 ITGB3BPQ13352 177 aaPredicted RBP20.55■□□□□ 0.88
CBX1-202ENST00000393408 CEP85LQ5SZL2 805 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 EIF2AK1Q9BQI3 630 aaKnown RBP20.55■□□□□ 0.88
CBX1-202ENST00000393408 EPN3Q9H201 632 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 RABGAP1Q9Y3P9 1069 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 H0YGN5 161 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 FERP16591 822 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 NPEPPSP55786 919 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 TCP10Q12799 353 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 UAP1Q16222 522 aaPredicted RBP20.55■□□□□ 0.88
CBX1-202ENST00000393408 B4GALNT4Q76KP1 1039 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 DDX42Q86XP3 938 aaKnown RBP eCLIP20.55■□□□□ 0.88
CBX1-202ENST00000393408 MICALL1Q8N3F8 863 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 OLIG1Q8TAK6 271 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 ZDHHC15Q96MV8 337 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 DDX47Q9H0S4 455 aaKnown RBP20.55■□□□□ 0.88
CBX1-202ENST00000393408 PCDHB13Q9Y5F0 798 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 NFS1Q9Y697 457 aa20.55■□□□□ 0.88
CBX1-202ENST00000393408 ATXN2Q99700 1313 aaKnown RBP20.55■□□□□ 0.88
CBX1-202ENST00000393408 ZMYM2Q9UBW7 1377 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 TMCO5BA8MYB1 307 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 F5H6K3 240 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 EML1O00423 815 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 ICA1Q05084 483 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 KLRC3Q07444 240 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 NT5DC3Q86UY8 548 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 CYP2W1Q8TAV3 490 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 U2AF1L4Q8WU68 220 aaKnown RBP20.54■□□□□ 0.88
CBX1-202ENST00000393408 NEUROG2Q9H2A3 272 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 KRIT1O00522 736 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 OPLAHO14841 1288 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 PPP1R37O75864 691 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 GAP43P17677 238 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 PTGISQ16647 500 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 RINT1Q6NUQ1 792 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 SYCE1Q8N0S2 351 aa20.54■□□□□ 0.88
CBX1-202ENST00000393408 GMCL1P1Q8NEA9 526 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms