RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 UNC45AQ9H3U1 944 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 ST7Q9NRC1 585 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 TMEM191BP0C7N4 346 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 NT5C2P49902 561 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 MAP2K1Q02750 393 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-205ENST00000392004 KIAA0753Q2KHM9 967 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 LBX2Q6XYB7 198 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 TLK2Q86UE8 772 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 SIAH1Q8IUQ4 282 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 GLYCTKQ8IVS8 523 aa11.29□□□□□ -0.6
COL6A3-205ENST00000392004 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.29□□□□□ -0.6
COL6A3-205ENST00000392004 ARFGEF2Q9Y6D5 1785 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 TRIM49BA6NDI0 452 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 GTPBP6O43824 516 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 PPP6R2O75170 966 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 URI1O94763 535 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 KRT9P35527 623 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 CCZ1BP86790 482 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 CCZ1P86791 482 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 DGKDQ16760 1214 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 PTPROQ16827 1216 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 TXLNBQ8N3L3 684 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 L3MBTL3Q96JM7 780 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 ABCA3Q99758 1704 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 H3BRB1 525 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 LAD1O00515 517 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 TOB1P50616 345 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 LBX1P52954 281 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 YARSP54577 528 aaKnown RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 TFDP1Q14186 410 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 ZNF394Q53GI3 561 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 CAGE1Q8TC20 777 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 TUT1Q9H6E5 874 aaKnown RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 SUCLA2Q9P2R7 463 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 DNAI1Q9UI46 699 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 PIN4Q9Y237 131 aaKnown RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 CACNA1FO60840 1977 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 STRNO43815 780 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 SKIV2LQ15477 1246 aaKnown RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 ZC2HC1CQ53FD0 456 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 WDR44Q5JSH3 913 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 KIAA1841Q6NSI8 718 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 EFCAB12Q6NXP0 572 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 SCARA5Q6ZMJ2 495 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 PPM1KQ8N3J5 372 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 AK8Q96MA6 479 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 ATP6V0A4Q9HBG4 840 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 CWC15Q9P013 229 aaKnown RBP11.28□□□□□ -0.6
COL6A3-205ENST00000392004 POLIQ9UNA4 740 aa11.28□□□□□ -0.6
COL6A3-205ENST00000392004 TMEM110-MUSTN1A8MSY1 372 aa11.27□□□□□ -0.6
COL6A3-205ENST00000392004 HIP1RO75146 1068 aa11.27□□□□□ -0.6
COL6A3-205ENST00000392004 PSMC6P62333 389 aa11.27□□□□□ -0.6
COL6A3-205ENST00000392004 ATP2C1P98194 919 aaPredicted RBP11.27□□□□□ -0.6
COL6A3-205ENST00000392004 CEP57Q86XR8 500 aa11.27□□□□□ -0.6
COL6A3-205ENST00000392004 ABHD16BQ9H3Z7 469 aa11.27□□□□□ -0.6
COL6A3-205ENST00000392004 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.27□□□□□ -0.6
COL6A3-205ENST00000392004 RSPH10B2B2RC85 870 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 WNT7AO00755 349 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 MEIS2O14770 477 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 ADAMTS3O15072 1205 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 CALUO43852 315 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-205ENST00000392004 NPM3O75607 178 aaKnown RBP11.27□□□□□ -0.61
COL6A3-205ENST00000392004 RSPH10BP0C881 870 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 ZBTB48P10074 688 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-205ENST00000392004 MAPK6Q16659 721 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 CATSPER3Q86XQ3 398 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 GON4LQ3T8J9 2241 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 TLR2O60603 784 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 CLCN6P51797 869 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 MAP2K5Q13163 448 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 SPA17Q15506 151 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 RIOX2Q8IUF8 465 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 NEK11Q8NG66 645 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 ZBTB9Q96C00 473 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 MTRQ99707 1265 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 SMARCAD1Q9H4L7 1026 aa11.27□□□□□ -0.61
COL6A3-205ENST00000392004 ARMCX3Q9UH62 379 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-205ENST00000392004 MARF1Q9Y4F3 1742 aaKnown RBP11.27□□□□□ -0.61
COL6A3-205ENST00000392004 GPR25O00155 361 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 GRK4P32298 578 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 CCL23P55773 120 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 PRPF4BQ13523 1007 aaKnown RBP11.26□□□□□ -0.61
COL6A3-205ENST00000392004 ARL6IP4Q66PJ3 421 aaKnown RBP11.26□□□□□ -0.61
COL6A3-205ENST00000392004 GIMAP8Q8ND71 665 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-205ENST00000392004 PPP1R13BQ96KQ4 1090 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 FAM213AQ9BRX8 229 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 RANBP17Q9H2T7 1088 aaKnown RBP11.26□□□□□ -0.61
COL6A3-205ENST00000392004 NRAPQ86VF7 1730 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 CA12O43570 354 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 PNMA6AP0CW24 399 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-205ENST00000392004 GNAT1P11488 350 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 CD58P19256 250 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 KLRC1P26715 233 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 EPHA7Q15375 998 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 ZNF568Q3ZCX4 644 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 RASAL3Q86YV0 1011 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 GTF3C2Q8WUA4 911 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-205ENST00000392004 LBHD1Q9BQE6 289 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-205ENST00000392004 ERAP1Q9NZ08 941 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 COL20A1Q9P218 1284 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms