RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 XPO4Q9C0E2 1151 aaKnown RBP11.37□□□□□ -0.59
VPS53-202ENST00000389040 STARD7Q9NQZ5 370 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 DISC1Q9NRI5 854 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 IFNKQ9P0W0 207 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 DACH1Q9UI36 760 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 A0A0U1RQG5 324 aaPredicted RBP11.36□□□□□ -0.59
VPS53-202ENST00000389040 GSTTP1A0A1W2PQM5 241 aa11.36□□□□□ -0.59
VPS53-202ENST00000389040 MYADML2A6NDP7 307 aa11.36□□□□□ -0.59
VPS53-202ENST00000389040 H3BRB1 525 aa11.36□□□□□ -0.59
VPS53-202ENST00000389040 HAS3O00219 553 aa11.36□□□□□ -0.59
VPS53-202ENST00000389040 MUTP22033 750 aa11.36□□□□□ -0.59
VPS53-202ENST00000389040 FXR2P51116 673 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS53-202ENST00000389040 BEX3Q00994 111 aa11.36□□□□□ -0.59
VPS53-202ENST00000389040 DNTTIP2Q5QJE6 756 aaKnown RBP11.36□□□□□ -0.59
VPS53-202ENST00000389040 LRRC8AQ8IWT6 810 aa11.36□□□□□ -0.59
VPS53-202ENST00000389040 C4orf32Q8N8J7 132 aa11.36□□□□□ -0.59
VPS53-202ENST00000389040 MLKLQ8NB16 471 aa11.36□□□□□ -0.59
VPS53-202ENST00000389040 PAGE5Q96GU1 130 aa11.36□□□□□ -0.59
VPS53-202ENST00000389040 PYM1Q9BRP8 204 aaKnown RBP11.36□□□□□ -0.59
VPS53-202ENST00000389040 SENP6Q9GZR1 1112 aaPredicted RBP11.36□□□□□ -0.59
VPS53-202ENST00000389040 TUT1Q9H6E5 874 aaKnown RBP11.36□□□□□ -0.59
VPS53-202ENST00000389040 SLC26A4O43511 780 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 CCNE2O96020 404 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 LGALS2P05162 132 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 RPLP2P05387 115 aaKnown RBP11.35□□□□□ -0.59
VPS53-202ENST00000389040 MYL3P08590 195 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 SUPT20HL2P0C7V6 817 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 GNAT1P11488 350 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 STAT5BP51692 787 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 FANCCQ00597 558 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 IL17AQ16552 155 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 CXCL17Q6UXB2 119 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 SLC39A5Q6ZMH5 540 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 DTHD1Q6ZMT9 781 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 ANKRD33Q7Z3H0 272 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 SH3RF1Q7Z6J0 888 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 FILIP1Q7Z7B0 1213 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 ATP6V0A1Q93050 837 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 VTI1AQ96AJ9 217 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 IMPACTQ9P2X3 320 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 VAV3Q9UKW4 847 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 MAFBQ9Y5Q3 323 aaPredicted RBP11.35□□□□□ -0.59
VPS53-202ENST00000389040 ARVCFO00192 962 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 TPM2P07951 284 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 ATP1A3P13637 1013 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 LONP1P36776 959 aaKnown RBP11.35□□□□□ -0.59
VPS53-202ENST00000389040 CDK7P50613 346 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 SOX10P56693 466 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 GSDMDP57764 484 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 ITGA7Q13683 1181 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 EPHA7Q15375 998 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 ERMNQ8TAM6 284 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 GLG1Q92896 1179 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 FAM167AQ96KS9 214 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 AK8Q96MA6 479 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 PKD2L1Q9P0L9 805 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 SAMM50Q9Y512 469 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 PPME1Q9Y570 386 aa11.35□□□□□ -0.59
VPS53-202ENST00000389040 KIAA1217Q5T5P2 1943 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 P4HBP07237 508 aaKnown RBP11.34□□□□□ -0.59
VPS53-202ENST00000389040 TXKP42681 527 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 AFMP43652 599 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 SPIRE1Q08AE8 756 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 MFSD10Q14728 455 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 ARID5BQ14865 1188 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 E2F4Q16254 413 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 MIER3Q7Z3K6 550 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 IQUBQ8NA54 791 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 KAT2BQ92831 832 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 TMEM60Q9H2L4 133 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 UNC45AQ9H3U1 944 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 BCAS3Q9H6U6 928 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 ZNF302Q9NR11 478 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 FANCLQ9NW38 375 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 NRCAMQ92823 1304 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 MCM3APO60318 1980 aa11.34□□□□□ -0.59
VPS53-202ENST00000389040 BRCA2P51587 3418 aa11.33□□□□□ -0.59
VPS53-202ENST00000389040 RRN3P2A6NIE6 340 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 BACH1O14867 736 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 CBFA2T2O43439 604 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 SERPINC1P01008 464 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 TXLNAP40222 546 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 PSEN2P49810 448 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 PSMC5P62195 406 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 DPYDQ12882 1025 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 KIAA0753Q2KHM9 967 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 HAUS3Q68CZ6 603 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 SWSAP1Q6NVH7 229 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 TMC6Q7Z403 805 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 EXOC8Q8IYI6 725 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 C7orf31Q8N865 590 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 IGSF22Q8N9C0 903 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 BBXQ8WY36 941 aaPredicted RBP11.33□□□□□ -0.6
VPS53-202ENST00000389040 NRBP2Q9NSY0 501 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 DCDC2CA8MYV0 355 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 TLR3O15455 904 aaKnown RBP11.33□□□□□ -0.6
VPS53-202ENST00000389040 HBP1O60381 514 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 LYPLA2O95372 231 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 ERCC5P28715 1186 aaPredicted RBP11.33□□□□□ -0.6
VPS53-202ENST00000389040 QARSP47897 775 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms