RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 AS3MTQ9HBK9 375 aa23.69■■□□□ 1.38
TRIM54-202ENST00000380075 RAB21Q9UL25 225 aa23.69■■□□□ 1.38
TRIM54-202ENST00000380075 PCDHA13Q9Y5I0 950 aa23.69■■□□□ 1.38
TRIM54-202ENST00000380075 AKR1B10O60218 316 aa23.69■■□□□ 1.38
TRIM54-202ENST00000380075 AOC2O75106 756 aa23.69■■□□□ 1.38
TRIM54-202ENST00000380075 NR2F2P24468 414 aa23.69■■□□□ 1.38
TRIM54-202ENST00000380075 EIF4A3P38919 411 aaKnown RBP23.69■■□□□ 1.38
TRIM54-202ENST00000380075 CYP4A11Q02928 519 aa23.69■■□□□ 1.38
TRIM54-202ENST00000380075 GABPB1Q06547 395 aaPredicted RBP23.69■■□□□ 1.38
TRIM54-202ENST00000380075 TRIM58Q8NG06 486 aa23.69■■□□□ 1.38
TRIM54-202ENST00000380075 HNRNPLLQ8WVV9 542 aaKnown RBP23.69■■□□□ 1.38
TRIM54-202ENST00000380075 TYW1Q9NV66 732 aaKnown RBP23.69■■□□□ 1.38
TRIM54-202ENST00000380075 KCND2Q9NZV8 630 aa23.69■■□□□ 1.38
TRIM54-202ENST00000380075 ATAD5Q96QE3 1844 aa23.68■■□□□ 1.38
TRIM54-202ENST00000380075 RCCD1A6NED2 376 aa23.68■■□□□ 1.38
TRIM54-202ENST00000380075 GAS7O60861 476 aa23.68■■□□□ 1.38
TRIM54-202ENST00000380075 RPL13P26373 211 aaKnown RBP23.68■■□□□ 1.38
TRIM54-202ENST00000380075 CKAP4Q07065 602 aaKnown RBP23.68■■□□□ 1.38
TRIM54-202ENST00000380075 SMCR8Q8TEV9 937 aaPredicted RBP23.68■■□□□ 1.38
TRIM54-202ENST00000380075 METTL14Q9HCE5 456 aaKnown RBP23.68■■□□□ 1.38
TRIM54-202ENST00000380075 KCNH4Q9UQ05 1017 aa23.68■■□□□ 1.38
TRIM54-202ENST00000380075 ZNF263O14978 683 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 EIF3DO15371 548 aaKnown RBP eCLIP23.67■■□□□ 1.38
TRIM54-202ENST00000380075 SLC16A3O15427 465 aaKnown RBP23.67■■□□□ 1.38
TRIM54-202ENST00000380075 CYP27A1Q02318 531 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 DGKZQ13574 1117 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 MTMR2Q13614 643 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 SLC9C1Q4G0N8 1177 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 MS4A4AQ96JQ5 239 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 ZSWIM4Q9H7M6 989 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 SEL1LQ9UBV2 794 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 TACC1O75410 805 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 SERPING1P05155 500 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 ICAM1P05362 532 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 PLEKP08567 350 aaPredicted RBP23.67■■□□□ 1.38
TRIM54-202ENST00000380075 CASP5P51878 434 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 SFMBT2Q5VUG0 894 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 RINT1Q6NUQ1 792 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 NEK9Q8TD19 979 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 TBC1D5Q92609 795 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 LPAR1Q92633 364 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 RUSC1Q9BVN2 902 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 LSM14BQ9BX40 385 aaKnown RBP23.67■■□□□ 1.38
TRIM54-202ENST00000380075 ANKZF1Q9H8Y5 726 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 LUC7LQ9NQ29 371 aaKnown RBP23.67■■□□□ 1.38
TRIM54-202ENST00000380075 RGL1Q9NZL6 768 aa23.67■■□□□ 1.38
TRIM54-202ENST00000380075 ARMCX3Q9UH62 379 aaPredicted RBP23.67■■□□□ 1.38
TRIM54-202ENST00000380075 RBAK-RBAKDNI3L0D1 243 aa23.66■■□□□ 1.38
TRIM54-202ENST00000380075 CXCL11O14625 94 aa23.66■■□□□ 1.38
TRIM54-202ENST00000380075 PJA2O43164 708 aa23.66■■□□□ 1.38
TRIM54-202ENST00000380075 NOL4O94818 638 aa23.66■■□□□ 1.38
TRIM54-202ENST00000380075 SLITRK3O94933 977 aa23.66■■□□□ 1.38
TRIM54-202ENST00000380075 ATP1A1P05023 1023 aaKnown RBP23.66■■□□□ 1.38
TRIM54-202ENST00000380075 HSD17B4P51659 736 aa23.66■■□□□ 1.38
TRIM54-202ENST00000380075 BACE1P56817 501 aa23.66■■□□□ 1.38
TRIM54-202ENST00000380075 NOGQ13253 232 aa23.66■■□□□ 1.38
TRIM54-202ENST00000380075 ZYXQ15942 572 aaKnown RBP23.66■■□□□ 1.38
TRIM54-202ENST00000380075 NFIL3Q16649 462 aa23.66■■□□□ 1.38
TRIM54-202ENST00000380075 ASTE1Q2TB18 679 aaPredicted RBP23.66■■□□□ 1.38
TRIM54-202ENST00000380075 EPC1Q9H2F5 836 aa23.66■■□□□ 1.38
TRIM54-202ENST00000380075 UBE4BO95155 1302 aa23.66■■□□□ 1.38
TRIM54-202ENST00000380075 WDR46O15213 610 aaKnown RBP23.65■■□□□ 1.38
TRIM54-202ENST00000380075 ERLIN1O75477 346 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 SNAPC2Q13487 334 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 EPHA7Q15375 998 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 SAMD3Q8N6K7 520 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 DNAJC5GQ8N7S2 189 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 NACC1Q96RE7 527 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 RIT2Q99578 217 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 ZNF577Q9BSK1 485 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 JRKLQ9Y4A0 524 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 FAM13AO94988 1023 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 BCRP11274 1271 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 GTF2A2P52657 109 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 HMGCS2P54868 508 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 GHRHRQ02643 423 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 KCNH2Q12809 1159 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 HGSNATQ68CP4 663 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 C1orf186Q6ZWK4 172 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 NIPA1Q7RTP0 329 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 MCF2L2Q86YR7 1114 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 CCDC155Q8N6L0 562 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 DYDC2Q96IM9 177 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 TEKT3Q9BXF9 490 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 GBP3Q9H0R5 595 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 PLCB1Q9NQ66 1216 aa23.65■■□□□ 1.38
TRIM54-202ENST00000380075 A0A0G2JLL6 359 aaPredicted RBP23.64■■□□□ 1.38
TRIM54-202ENST00000380075 MYBP10242 640 aa23.64■■□□□ 1.38
TRIM54-202ENST00000380075 CTTNQ14247 550 aaKnown RBP23.64■■□□□ 1.38
TRIM54-202ENST00000380075 STXBP4Q6ZWJ1 553 aa23.64■■□□□ 1.38
TRIM54-202ENST00000380075 PRRT2Q7Z6L0 340 aaPredicted RBP23.64■■□□□ 1.38
TRIM54-202ENST00000380075 TPH2Q8IWU9 490 aa23.64■■□□□ 1.38
TRIM54-202ENST00000380075 ALS2CR12Q96Q35 445 aa23.64■■□□□ 1.38
TRIM54-202ENST00000380075 PNMA2Q9UL42 364 aa23.64■■□□□ 1.38
TRIM54-202ENST00000380075 TFR2Q9UP52 801 aa23.64■■□□□ 1.38
TRIM54-202ENST00000380075 PHIPQ8WWQ0 1821 aa23.64■■□□□ 1.37
TRIM54-202ENST00000380075 FRMPD4Q14CM0 1322 aa23.64■■□□□ 1.37
TRIM54-202ENST00000380075 PRPF6O94906 941 aaKnown RBP23.63■■□□□ 1.37
TRIM54-202ENST00000380075 GCNT3O95395 438 aa23.63■■□□□ 1.37
TRIM54-202ENST00000380075 AFPP02771 609 aaKnown RBP23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms