RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 VAV3Q9UKW4 847 aa27.66■■■□□ 2.02
C9orf40-201ENST00000376854 TAL1P17542 331 aaPredicted RBP27.66■■■□□ 2.02
C9orf40-201ENST00000376854 MAGEA9P43362 315 aa27.66■■■□□ 2.02
C9orf40-201ENST00000376854 SKOR1P84550 965 aa27.66■■■□□ 2.02
C9orf40-201ENST00000376854 TRADDQ15628 312 aa27.66■■■□□ 2.02
C9orf40-201ENST00000376854 DACT2Q5SW24 774 aa27.66■■■□□ 2.02
C9orf40-201ENST00000376854 SYDE2Q5VT97 1194 aa27.66■■■□□ 2.02
C9orf40-201ENST00000376854 TTC19Q6DKK2 380 aaPredicted RBP27.66■■■□□ 2.02
C9orf40-201ENST00000376854 TMEM179Q6ZVK1 233 aa27.66■■■□□ 2.02
C9orf40-201ENST00000376854 LRRC57Q8N9N7 239 aa27.66■■■□□ 2.02
C9orf40-201ENST00000376854 WHAMMQ8TF30 809 aa27.66■■■□□ 2.02
C9orf40-201ENST00000376854 PBKQ96KB5 322 aa27.66■■■□□ 2.02
C9orf40-201ENST00000376854 BCAS3Q9H6U6 928 aa27.66■■■□□ 2.02
C9orf40-201ENST00000376854 SCN9AQ15858 1988 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 ZNF233A6NK53 670 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 CLIC2O15247 247 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 CIITAP33076 1130 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 CCT5P48643 541 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 SF3B2Q13435 895 aaKnown RBP27.65■■■□□ 2.02
C9orf40-201ENST00000376854 TATDN1Q6P1N9 297 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 BCAS4Q8TDM0 211 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 SLC35C1Q96A29 364 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 SIX2Q9NPC8 291 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 GCNT4Q9P109 453 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 FBXL5Q9UKA1 691 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 AJAP1Q9UKB5 411 aaPredicted RBP27.65■■■□□ 2.02
C9orf40-201ENST00000376854 RABGAP1Q9Y3P9 1069 aa27.65■■■□□ 2.02
C9orf40-201ENST00000376854 GDF11O95390 407 aa27.64■■■□□ 2.02
C9orf40-201ENST00000376854 NDUFB10O96000 172 aa27.64■■■□□ 2.02
C9orf40-201ENST00000376854 HOXA13P31271 388 aaPredicted RBP27.64■■■□□ 2.02
C9orf40-201ENST00000376854 KCTD16Q68DU8 428 aa27.64■■■□□ 2.02
C9orf40-201ENST00000376854 SH2D3CQ8N5H7 860 aa27.64■■■□□ 2.02
C9orf40-201ENST00000376854 GMCL1P1Q8NEA9 526 aa27.64■■■□□ 2.02
C9orf40-201ENST00000376854 CYP2W1Q8TAV3 490 aa27.64■■■□□ 2.02
C9orf40-201ENST00000376854 EIF2AK1Q9BQI3 630 aaKnown RBP27.64■■■□□ 2.02
C9orf40-201ENST00000376854 EYA4O95677 639 aa27.64■■■□□ 2.02
C9orf40-201ENST00000376854 MMP14P50281 582 aa27.64■■■□□ 2.02
C9orf40-201ENST00000376854 KCNA1Q09470 495 aa27.64■■■□□ 2.02
C9orf40-201ENST00000376854 PIK3R5Q8WYR1 880 aa27.64■■■□□ 2.02
C9orf40-201ENST00000376854 GMCL1Q96IK5 515 aa27.64■■■□□ 2.02
C9orf40-201ENST00000376854 POLR3CQ9BUI4 534 aaPredicted RBP27.64■■■□□ 2.02
C9orf40-201ENST00000376854 CEP104O60308 925 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 ECE2O60344 883 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 ANXA13P27216 316 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 ZNF76P36508 570 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 JAM2P57087 298 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 PTPROQ16827 1216 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 VPS36Q86VN1 386 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 IDI2Q9BXS1 227 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 RGL1Q9NZL6 768 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 PCDHB13Q9Y5F0 798 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 EML1O00423 815 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 APBA3O96018 575 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 TPCN2Q8NHX9 752 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 ACTRT1Q8TDG2 376 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 RABEP2Q9H5N1 569 aa27.63■■■□□ 2.01
C9orf40-201ENST00000376854 ABCB5Q2M3G0 1257 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 STRIP1Q5VSL9 837 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 GJB7Q6PEY0 223 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 NENFQ9UMX5 172 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 SHTN1A0MZ66 631 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 A6NNZ2 444 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 SFI1A8K8P3 1242 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 OPLAHO14841 1288 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 JAG1P78504 1218 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 TUBB8Q3ZCM7 444 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 CD302Q8IX05 232 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 SCFD2Q8WU76 684 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 TAF1DQ9H5J8 278 aaPredicted RBP27.62■■■□□ 2.01
C9orf40-201ENST00000376854 OLFML3Q9NRN5 406 aa27.62■■■□□ 2.01
C9orf40-201ENST00000376854 H2AFZP0C0S5 128 aa27.61■■■□□ 2.01
C9orf40-201ENST00000376854 GAP43P17677 238 aa27.61■■■□□ 2.01
C9orf40-201ENST00000376854 RINT1Q6NUQ1 792 aa27.61■■■□□ 2.01
C9orf40-201ENST00000376854 H2AFVQ71UI9 128 aa27.61■■■□□ 2.01
C9orf40-201ENST00000376854 ISCUQ9H1K1 167 aa27.61■■■□□ 2.01
C9orf40-201ENST00000376854 GTPBP10A4D1E9 387 aaKnown RBP27.6■■■□□ 2.01
C9orf40-201ENST00000376854 TMCO5BA8MYB1 307 aa27.6■■■□□ 2.01
C9orf40-201ENST00000376854 EBAG9O00559 213 aa27.6■■■□□ 2.01
C9orf40-201ENST00000376854 TGFB1I1O43294 461 aa27.6■■■□□ 2.01
C9orf40-201ENST00000376854 BMP3P12645 472 aa27.6■■■□□ 2.01
C9orf40-201ENST00000376854 ERVK-9P63128 1117 aa27.6■■■□□ 2.01
C9orf40-201ENST00000376854 PDCLQ13371 301 aa27.6■■■□□ 2.01
C9orf40-201ENST00000376854 PIGOQ8TEQ8 1089 aa27.6■■■□□ 2.01
C9orf40-201ENST00000376854 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP27.6■■■□□ 2.012e-9■■■■■ 44.1
C9orf40-201ENST00000376854 MRIQ9BWK5 157 aa27.6■■■□□ 2.01
C9orf40-201ENST00000376854 PGRMC1O00264 195 aaKnown RBP27.59■■■□□ 2.01
C9orf40-201ENST00000376854 DDX3XO00571 662 aaKnown RBP eCLIP27.59■■■□□ 2.017e-16■■■■□ 21
C9orf40-201ENST00000376854 CYP3A4P08684 503 aa27.59■■■□□ 2.01
C9orf40-201ENST00000376854 ATP1A2P50993 1020 aa27.59■■■□□ 2.01
C9orf40-201ENST00000376854 HLTFQ14527 1009 aaKnown RBP eCLIP27.59■■■□□ 2.01
C9orf40-201ENST00000376854 PEX26Q7Z412 305 aa27.59■■■□□ 2.01
C9orf40-201ENST00000376854 METTL13Q8N6R0 699 aa27.59■■■□□ 2.01
C9orf40-201ENST00000376854 LMBR1Q8WVP7 490 aa27.59■■■□□ 2.01
C9orf40-201ENST00000376854 AP1M1Q9BXS5 423 aa27.59■■■□□ 2.01
C9orf40-201ENST00000376854 ATP8B3O60423 1300 aa27.59■■■□□ 2.01
C9orf40-201ENST00000376854 FAM13AO94988 1023 aa27.59■■■□□ 2.01
C9orf40-201ENST00000376854 CHRNA5P30532 468 aa27.59■■■□□ 2.01
C9orf40-201ENST00000376854 HSPA9P38646 679 aaKnown RBP27.59■■■□□ 2.01
C9orf40-201ENST00000376854 CTTNQ14247 550 aaKnown RBP27.59■■■□□ 2.01
C9orf40-201ENST00000376854 BORCS6Q96GS4 357 aa27.59■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 164.9 ms