RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 Q3C1V9 767 aa7.83□□□□□ -1.16
SYNE1-208ENST00000367256 RWDD4Q6NW29 188 aaKnown RBP7.83□□□□□ -1.16
SYNE1-208ENST00000367256 POTEBQ6S5H4 581 aa7.83□□□□□ -1.16
SYNE1-208ENST00000367256 SYT2Q8N9I0 419 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-208ENST00000367256 PCDHA4Q9UN74 947 aa7.83□□□□□ -1.16
SYNE1-208ENST00000367256 KLRF2D3W0D1 207 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 SRGAP2CP0DJJ0 459 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 PSMA2P25787 234 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 KCNA1Q09470 495 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 UBE3CQ15386 1083 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 TAGAPQ8N103 731 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 PROM2Q8N271 834 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 MXD3Q9BW11 206 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 PCDHA13Q9Y5I0 950 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 RFX7Q2KHR2 1363 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 FMNL1O95466 1100 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 NCAPG2Q86XI2 1143 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 CATSPER3Q86XQ3 398 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 ZWILCHQ9H900 591 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 WDR17Q8IZU2 1322 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 PLEKHG1Q9ULL1 1385 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 NEURL1BA8MQ27 555 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 MAP3K10Q02779 954 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 CERKLQ49MI3 558 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 EXOC8Q8IYI6 725 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 SMYD4Q8IYR2 804 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 SLC8A2Q9UPR5 921 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 SNX5Q9Y5X3 404 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 GOLGA8HP0CJ92 632 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 ALDH1B1P30837 517 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 EIF4A3P38919 411 aaKnown RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 BBS9Q3SYG4 887 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 ZNF577Q9BSK1 485 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 NFU1Q9UMS0 254 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 FGGP02679 453 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 NFKBIAP25963 317 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 SERPINB4P48594 390 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 RAPGEF5Q92565 580 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 FAM149B1Q96BN6 582 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 EEF2KMTQ96G04 330 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 VPS39Q96JC1 886 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 GIMAP4Q9NUV9 329 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 LRFN2Q9ULH4 789 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 DTNBO60941 627 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 GFAPP14136 432 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 SCRN1Q12765 414 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 AP1M1Q9BXS5 423 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 SENP1Q9P0U3 644 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 GOLGA4Q13439 2230 aaKnown RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 SAMD9Q5K651 1589 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 PMS1P54277 932 aaKnown RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 PABPC4Q13310 644 aaKnown RBP eCLIP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 CCDC85BQ15834 202 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 MMTAG2Q9BU76 263 aaKnown RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 TRIM45Q9H8W5 580 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 BTG4Q9NY30 223 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 ZNF229Q9UJW7 825 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 WDR19Q8NEZ3 1342 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 ARL4CP56559 192 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 ORC2Q13416 577 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 ZC3H12BQ5HYM0 836 aaKnown RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 SCARA5Q6ZMJ2 495 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 EPM2AIP1Q7L775 607 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 TRMT2AQ8IZ69 625 aaKnown RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 ZNF579Q8NAF0 562 aaKnown RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 GCNAQ96QF7 691 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 COPRSQ9NQ92 184 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 GINM1Q9NU53 330 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 BICRAQ9NZM4 1560 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 PRR23D1E9PI22 279 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 PRR23D2P0DMB1 279 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 SLC7A5Q01650 507 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 ABCB5Q2M3G0 1257 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 C11orf57Q6ZUT1 292 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-208ENST00000367256 STX19Q8N4C7 294 aa7.82□□□□□ -1.16
SYNE1-208ENST00000367256 RARS2Q5T160 578 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 ANO5Q75V66 913 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 HEXIM2Q96MH2 286 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 PPCSQ9HAB8 311 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 ABCB6Q9NP58 842 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 CHCHD3Q9NX63 227 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 GTSE1Q9NYZ3 720 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 ATP7BP35670 1465 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 VIRMAQ69YN4 1812 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 BZW1Q7L1Q6 419 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 KRT27Q7Z3Y8 459 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 KIRREL3Q8IZU9 778 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 TEX9Q8N6V9 391 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 SDR42E1Q8WUS8 393 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 TGS1Q96RS0 853 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 ASPSCR1Q9BZE9 553 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 SYTL2Q9HCH5 934 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 NRBP1Q9UHY1 535 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 A0A1B0GW55 424 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 COPEO14579 308 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 DUX4L2P0CJ85 424 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 DUX4L3P0CJ86 424 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 DUX4L4P0CJ87 422 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 DUX4L5P0CJ88 424 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms