RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 GNL1P36915 607 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-201ENST00000359947 YWHAHQ04917 246 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-201ENST00000359947 TRIM68Q6AZZ1 485 aa16.76■□□□□ 0.27
PTPRF-201ENST00000359947 OR6J1Q8NGC5 347 aa16.76■□□□□ 0.27
PTPRF-201ENST00000359947 HVCN1Q96D96 273 aa16.76■□□□□ 0.27
PTPRF-201ENST00000359947 ADORA2BP29275 332 aa16.76■□□□□ 0.27
PTPRF-201ENST00000359947 PSPC1Q8WXF1 523 aaKnown RBP16.76■□□□□ 0.27
PTPRF-201ENST00000359947 SUGT1Q9Y2Z0 365 aa16.76■□□□□ 0.27
PTPRF-201ENST00000359947 RGS12O14924 1447 aa16.76■□□□□ 0.27
PTPRF-201ENST00000359947 KIF3CO14782 793 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 STAT3P40763 770 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 STAP2Q9UGK3 403 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 ZBTB12Q9Y330 459 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-201ENST00000359947 HEY1Q9Y5J3 304 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 TCP11X2Q5H9J9 407 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 BEST2Q8NFU1 509 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 IFT43Q96FT9 208 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 AATKQ6ZMQ8 1374 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 NNMTP40261 264 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 CDC42BPGQ6DT37 1551 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 STRBPQ96SI9 672 aaKnown RBP16.75■□□□□ 0.27
PTPRF-201ENST00000359947 MYBP10242 640 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 EPHA10Q5JZY3 1008 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 SLC10A5Q5PT55 438 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 PADI6Q6TGC4 694 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 NRBP1Q9UHY1 535 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 CPDO75976 1380 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 ECEL1O95672 775 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 FRA10AC1Q70Z53 315 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 PAGE5Q96GU1 130 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 FSD1LQ9BXM9 530 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 SART1O43290 800 aaKnown RBP16.75■□□□□ 0.27
PTPRF-201ENST00000359947 COPB2P35606 906 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 NFIXQ14938 502 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 ZKSCAN8Q15776 578 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-201ENST00000359947 RCSD1Q6JBY9 416 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 DAAM1Q9Y4D1 1078 aa16.75■□□□□ 0.27
PTPRF-201ENST00000359947 GCLMP48507 274 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 SLMAPQ14BN4 828 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 AP1M1Q9BXS5 423 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 GPBP1L1Q9HC44 474 aaPredicted RBP16.74■□□□□ 0.27
PTPRF-201ENST00000359947 EPB41L5Q9HCM4 733 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 UTYO14607 1347 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 MUM1Q2TAK8 710 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 TMEM270Q6UE05 265 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 GLYCTKQ8IVS8 523 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 FAM81BQ96LP2 452 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 ESRRBO95718 433 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 ADGRF4Q8IZF3 695 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 FAM167AQ96KS9 214 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 EIF4A3P38919 411 aaKnown RBP16.74■□□□□ 0.27
PTPRF-201ENST00000359947 KCNJ6P48051 423 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 TRIM67Q6ZTA4 783 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 POLR3EQ9NVU0 708 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 LDHAP00338 332 aaKnown RBP16.74■□□□□ 0.27
PTPRF-201ENST00000359947 TMEM62Q0P6H9 643 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 F5H6K3 240 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 SMIM24O75264 130 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 KLRC3Q07444 240 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 BBS9Q3SYG4 887 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 ACRBPQ8NEB7 543 aa16.74■□□□□ 0.27
PTPRF-201ENST00000359947 TTC4O95801 387 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 IFNAR1P17181 557 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 TNFAIP2Q03169 654 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 PPWD1Q96BP3 646 aaKnown RBP16.73■□□□□ 0.27
PTPRF-201ENST00000359947 MXD3Q9BW11 206 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 MROH7-TTC4A0A0A0MT08 1334 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 PIK3R2O00459 728 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 NHEJ1Q9H9Q4 299 aaPredicted RBP16.73■□□□□ 0.27
PTPRF-201ENST00000359947 MYL1P05976 194 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 SLFN14P0C7P3 912 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 CYP19A1P11511 503 aaPredicted RBP16.73■□□□□ 0.27
PTPRF-201ENST00000359947 C11orf57Q6ZUT1 292 aaPredicted RBP16.73■□□□□ 0.27
PTPRF-201ENST00000359947 POLR3FQ9H1D9 316 aaPredicted RBP16.73■□□□□ 0.27
PTPRF-201ENST00000359947 KLHL8Q9P2G9 620 aaPredicted RBP16.73■□□□□ 0.27
PTPRF-201ENST00000359947 OPHN1O60890 802 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 MX2P20592 715 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 PGBD3Q8N328 593 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 MRPL46Q9H2W6 279 aaKnown RBP16.73■□□□□ 0.27
PTPRF-201ENST00000359947 ACAD9Q9H845 621 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 SOWAHDA6NJG2 315 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 KBTBD13C9JR72 458 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 H7C1W4 665 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 CYP2B6P20813 491 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 CASP1P29466 404 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 MXD4Q14582 209 aaPredicted RBP16.73■□□□□ 0.27
PTPRF-201ENST00000359947 SIK2Q9H0K1 926 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 ZBTB41Q5SVQ8 909 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 TBC1D10CQ8IV04 446 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 FAF2Q96CS3 445 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 SPON2Q9BUD6 331 aa16.73■□□□□ 0.27
PTPRF-201ENST00000359947 E9PMD0 336 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 FAM217BQ9NTX9 383 aaPredicted RBP16.72■□□□□ 0.27
PTPRF-201ENST00000359947 AFF4Q9UHB7 1163 aaKnown RBP16.72■□□□□ 0.27
PTPRF-201ENST00000359947 C6orf222P0C671 652 aaPredicted RBP16.72■□□□□ 0.27
PTPRF-201ENST00000359947 LRRC31Q6UY01 552 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 POTEDQ86YR6 584 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 SAAL1Q96ER3 474 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 SRPRBQ9Y5M8 271 aaKnown RBP16.72■□□□□ 0.27
PTPRF-201ENST00000359947 CYB5R4Q7L1T6 521 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms