RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 RGL1Q9NZL6 768 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 E9PCH4 1651 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 GNAT1P11488 350 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 TCF3P15923 654 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 ABCD1P33897 745 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 NBPF20Q3BBV1 942 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 BBS9Q3SYG4 887 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 KCTD16Q68DU8 428 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 NBPF10Q6P3W6 841 aaKnown RBP10.92□□□□□ -0.66
CLIP1-202ENST00000358808 LRRC31Q6UY01 552 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 DDX53Q86TM3 631 aaKnown RBP10.92□□□□□ -0.66
CLIP1-202ENST00000358808 SEPT12Q8IYM1 358 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 ANKRD13CQ8N6S4 541 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 CNOT6LQ96LI5 555 aaKnown RBP10.92□□□□□ -0.66
CLIP1-202ENST00000358808 UBE2TQ9NPD8 197 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-202ENST00000358808 MED4Q9NPJ6 270 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 GIMAP4Q9NUV9 329 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 GTSE1Q9NYZ3 720 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 WARS2Q9UGM6 360 aaKnown RBP10.92□□□□□ -0.66
CLIP1-202ENST00000358808 SPATA31A6Q5VVP1 1343 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 INSRP06213 1382 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 KCNQ3O43525 872 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 MAN1A2O60476 641 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 LIG3P49916 1009 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 BCAS4Q8TDM0 211 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 ANGPTL2Q9UKU9 493 aa10.92□□□□□ -0.66
CLIP1-202ENST00000358808 DNAJC6O75061 913 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 WBP4O75554 376 aaKnown RBP10.91□□□□□ -0.66
CLIP1-202ENST00000358808 RPSAP08865 295 aaKnown RBP10.91□□□□□ -0.66
CLIP1-202ENST00000358808 GRIN1Q05586 938 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 C16orf72Q14CZ0 275 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 STXBP2Q15833 593 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 BZW1Q7L1Q6 419 aaKnown RBP10.91□□□□□ -0.66
CLIP1-202ENST00000358808 CCHCR1Q8TD31 782 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 RAPGEF5Q92565 580 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 FAF2Q96CS3 445 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 TMEM206Q9H813 350 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 PNMA3Q9UL41 463 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 ASAP1Q9ULH1 1129 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 TNKSO95271 1327 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 SUPT3HB4E1H0 165 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 NPM3O75607 178 aaKnown RBP10.91□□□□□ -0.66
CLIP1-202ENST00000358808 SERPIND1P05546 499 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 SKIP12755 728 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 DDIT3P35638 169 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 OCA2Q04671 838 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 SURF1Q15526 300 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 AARS2Q5JTZ9 985 aaKnown RBP10.91□□□□□ -0.66
CLIP1-202ENST00000358808 SLC10A5Q5PT55 438 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 CENPKQ9BS16 269 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 NDFIP2Q9NV92 336 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 DONSONQ9NYP3 566 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 MADDQ8WXG6 1647 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 KRT8P05787 483 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 ATP5JP18859 108 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 PLTPP55058 493 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 C10orf76Q5T2E6 689 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 SCG3Q8WXD2 468 aaKnown RBP10.91□□□□□ -0.66
CLIP1-202ENST00000358808 ASPSCR1Q9BZE9 553 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 PIK3C2BO00750 1634 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 COBLO75128 1261 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 TAS2R42Q7RTR8 314 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 MSTO1Q9BUK6 570 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 ING2Q9H160 280 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 KLHL8Q9P2G9 620 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-202ENST00000358808 SNX5Q9Y5X3 404 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 IQANK1A0A1B0GTG1 560 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 RAD17O75943 681 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 ERFEQ4G0M1 354 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 FAM133BQ5BKY9 247 aaKnown RBP10.91□□□□□ -0.66
CLIP1-202ENST00000358808 PLEKHM3Q6ZWE6 761 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 TEX2Q8IWB9 1127 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 FANCBQ8NB91 859 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 KLHL29Q96CT2 875 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 CCDC90BQ9GZT6 254 aa10.91□□□□□ -0.66
CLIP1-202ENST00000358808 LRRIQ1Q96JM4 1722 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 MEIS1O00470 390 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 ASMTLO95671 621 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 CA4P22748 312 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 ZSCAN26Q16670 478 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 ZNF827Q17R98 1081 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 AP1ARQ63HQ0 302 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 PDXDC2PQ6P474 469 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 SYMPKQ92797 1274 aaKnown RBP10.9□□□□□ -0.66
CLIP1-202ENST00000358808 TUBB6Q9BUF5 446 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 WDR11Q9BZH6 1224 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 TRPV6Q9H1D0 765 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 ZMYM6O95789 1325 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 TBC1D19Q8N5T2 526 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 GREM2Q9H772 168 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 ATP8A1Q9Y2Q0 1164 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 SPDYE5A6NIY4 337 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 SEMA3EO15041 775 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 PSMA2P25787 234 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 GRAMD1BQ3KR37 738 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 SPDYE7PQ495Y7 208 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 CHMP1BQ7LBR1 199 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 HIPK4Q8NE63 616 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 C6orf203Q9P0P8 240 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-202ENST00000358808 PPP2R2CQ9Y2T4 447 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms