RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 SASH3O75995 380 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 RNF169Q8NCN4 708 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 ARL8AQ96BM9 186 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 TTC25Q96NG3 672 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 HSPA4LO95757 839 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 HIC1Q14526 733 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 CNGA3Q16281 694 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 CCDC137Q6PK04 289 aaKnown RBP12.97□□□□□ -0.33
COL12A1-202ENST00000345356 NSMFQ6X4W1 530 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 ING2Q9H160 280 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 DDX28Q9NUL7 540 aaKnown RBP12.97□□□□□ -0.33
COL12A1-202ENST00000345356 ADD3Q9UEY8 706 aaKnown RBP12.97□□□□□ -0.33
COL12A1-202ENST00000345356 ITIH6Q6UXX5 1313 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 MAGEA13PA6NCF6 341 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 TTI1O43156 1089 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 PRPF6O94906 941 aaKnown RBP12.96□□□□□ -0.33
COL12A1-202ENST00000345356 HSPA8P11142 646 aaKnown RBP12.96□□□□□ -0.33
COL12A1-202ENST00000345356 ADD2P35612 726 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 NCAPHQ15003 741 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 DEPDC1BQ8WUY9 529 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 ETAA1Q9NY74 926 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 DBR1Q9UK59 544 aaKnown RBP12.96□□□□□ -0.33
COL12A1-202ENST00000345356 PHKA1P46020 1223 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 DHX34Q14147 1143 aaKnown RBP12.96□□□□□ -0.33
COL12A1-202ENST00000345356 DAB2IPQ5VWQ8 1189 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 DARS2Q6PI48 645 aaKnown RBP12.96□□□□□ -0.33
COL12A1-202ENST00000345356 TMC4Q7Z404 712 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 C3orf20Q8ND61 904 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 MDM1Q8TC05 714 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 KDSRQ06136 332 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 MRPL47Q9HD33 250 aaKnown RBP12.96□□□□□ -0.33
COL12A1-202ENST00000345356 SCHIP1Q9P0W5 487 aaPredicted RBP12.96□□□□□ -0.33
COL12A1-202ENST00000345356 ZNF229Q9UJW7 825 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 PITPNM2Q9BZ72 1349 aa12.96□□□□□ -0.33
COL12A1-202ENST00000345356 ATP6V1G2O95670 118 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 ARL4CP56559 192 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 TPTE2Q6XPS3 522 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 B4GALNT2Q8NHY0 566 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 POLR3CQ9BUI4 534 aaPredicted RBP12.96□□□□□ -0.34
COL12A1-202ENST00000345356 HEMGNQ9BXL5 484 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 CCDC87Q9NVE4 849 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 PCDHB4Q9Y5E5 795 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 RAD51CO43502 376 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 PCP11498 1178 aaKnown RBP12.96□□□□□ -0.34
COL12A1-202ENST00000345356 ACADSP16219 412 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 BCAMP50895 628 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 AP1B1Q10567 949 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 HP1BP3Q5SSJ5 553 aaPredicted RBP12.96□□□□□ -0.34
COL12A1-202ENST00000345356 TRIM51Q9BSJ1 452 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 SH2D4AQ9H788 454 aa12.96□□□□□ -0.34
COL12A1-202ENST00000345356 ADCY3O60266 1144 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 ENO1P06733 434 aaKnown RBP12.95□□□□□ -0.34
COL12A1-202ENST00000345356 PYGBP11216 843 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 MRPS15P82914 257 aaKnown RBP12.95□□□□□ -0.34
COL12A1-202ENST00000345356 RSRC2Q7L4I2 434 aaKnown RBP12.95□□□□□ -0.34
COL12A1-202ENST00000345356 RNF103-CHMP3A0A140T963 221 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 HOXA7P31268 230 aaPredicted RBP12.95□□□□□ -0.34
COL12A1-202ENST00000345356 PIK3CAP42336 1068 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 LIG4P49917 911 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 CTSWP56202 376 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 CADPS2Q86UW7 1296 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 OXER1Q8TDS5 423 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.95□□□□□ -0.34
COL12A1-202ENST00000345356 FUCA2Q9BTY2 467 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 TRIM15Q9C019 465 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 ZC3H12CQ9C0D7 883 aaKnown RBP12.95□□□□□ -0.34
COL12A1-202ENST00000345356 NPHS2Q9NP85 383 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 TUBE1Q9UJT0 475 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 RIMBP2O15034 1052 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 LPXNO60711 386 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 GAP43P17677 238 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 KLHL38Q2WGJ6 581 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 NAF1Q96HR8 494 aaKnown RBP12.95□□□□□ -0.34
COL12A1-202ENST00000345356 ASCC2Q9H1I8 757 aaPredicted RBP12.95□□□□□ -0.34
COL12A1-202ENST00000345356 ZNF446Q9NWS9 450 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 GOLGA8SH3BPF8 625 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 GOLGA8MH3BSY2 632 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 KRT75O95678 551 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 GYPCP04921 128 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 LONRF1Q17RB8 773 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 SPOPLQ6IQ16 392 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 PI16Q6UXB8 463 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 UNC13DQ70J99 1090 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 ANKZF1Q9H8Y5 726 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 TLK1Q9UKI8 766 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 STRIP2Q9ULQ0 834 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 KDM6BO15054 1643 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 IL2RBP14784 551 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 CEBPAP49715 358 aaPredicted RBP12.95□□□□□ -0.34
COL12A1-202ENST00000345356 PDXDC1Q6P996 788 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 LRRC34Q8IZ02 419 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 RAPGEF5Q92565 580 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 KIFC3Q9BVG8 833 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 UBN1Q9NPG3 1134 aa12.95□□□□□ -0.34
COL12A1-202ENST00000345356 TTC7AQ9ULT0 858 aaPredicted RBP12.95□□□□□ -0.34
COL12A1-202ENST00000345356 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.95□□□□□ -0.34
COL12A1-202ENST00000345356 ARHGEF9O43307 516 aa12.94□□□□□ -0.34
COL12A1-202ENST00000345356 MYBL1P10243 752 aa12.94□□□□□ -0.34
COL12A1-202ENST00000345356 BTKQ06187 659 aa12.94□□□□□ -0.34
COL12A1-202ENST00000345356 MDH1BQ5I0G3 518 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms