RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TISP43B9A030 160 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 IPO5O00410 1097 aaKnown RBP11.34□□□□□ -0.59
LIMA1-201ENST00000341247 SORBS3O60504 671 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 UCHL3P15374 230 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 NOP2P46087 812 aaKnown RBP11.34□□□□□ -0.59
LIMA1-201ENST00000341247 RASA3Q14644 834 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 EDRF1Q3B7T1 1238 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 FAM178BQ8IXR5 827 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 RIN2Q8WYP3 895 aaPredicted RBP11.34□□□□□ -0.59
LIMA1-201ENST00000341247 LRRC1Q9BTT6 524 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 PCIF1Q9H4Z3 704 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 TGFB1I1O43294 461 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 MYCLP12524 364 aaPredicted RBP11.34□□□□□ -0.59
LIMA1-201ENST00000341247 EIF2AK2P19525 551 aaKnown RBP11.34□□□□□ -0.59
LIMA1-201ENST00000341247 PON1P27169 355 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 RTKN2Q8IZC4 609 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 IQCDQ96DY2 449 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 POLR3CQ9BUI4 534 aaPredicted RBP11.34□□□□□ -0.59
LIMA1-201ENST00000341247 GANQ9H2C0 597 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 TYW1Q9NV66 732 aaKnown RBP11.34□□□□□ -0.59
LIMA1-201ENST00000341247 A0A0U1RQG5 324 aaPredicted RBP11.34□□□□□ -0.59
LIMA1-201ENST00000341247 ANO9A1A5B4 782 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 PIK3CDO00329 1044 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 MAP2K7O14733 419 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 ZBTB7AO95365 584 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 CYP3A4P08684 503 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 SYCP3Q8IZU3 236 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 RANBP17Q9H2T7 1088 aaKnown RBP11.34□□□□□ -0.59
LIMA1-201ENST00000341247 PARVGQ9HBI0 331 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 DMGDHQ9UI17 866 aaKnown RBP11.34□□□□□ -0.59
LIMA1-201ENST00000341247 FAM184BQ9ULE4 1060 aa11.34□□□□□ -0.59
LIMA1-201ENST00000341247 ATP8B1O43520 1251 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 ITGB5P18084 799 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 KLHDC7AQ5VTJ3 777 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 C1orf186Q6ZWK4 172 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 EPM2AIP1Q7L775 607 aaPredicted RBP11.33□□□□□ -0.6
LIMA1-201ENST00000341247 ZNF571Q7Z3V5 609 aaPredicted RBP11.33□□□□□ -0.6
LIMA1-201ENST00000341247 PROCA1Q8NCQ7 364 aaPredicted RBP11.33□□□□□ -0.6
LIMA1-201ENST00000341247 RBM46Q8TBY0 533 aaKnown RBP11.33□□□□□ -0.6
LIMA1-201ENST00000341247 TLR10Q9BXR5 811 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 ZNRF3Q9ULT6 936 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 TRAF3IP3Q9Y228 551 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 FAN1Q9Y2M0 1017 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 ARHGEF35A5YM69 484 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 PDXKO00764 312 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 GFPT2O94808 682 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 PPP4R3CPQ6ZMV5 832 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 ZNF662Q6ZS27 426 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 FAM186BQ8IYM0 893 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 SPATA4Q8NEY3 305 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 HYOU1Q9Y4L1 999 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 RBBP6Q7Z6E9 1792 aaKnown RBP11.33□□□□□ -0.6
LIMA1-201ENST00000341247 SSU72P8A0A1W2PR75 194 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 FLOT1O75955 427 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 RPL13P26373 211 aaKnown RBP11.33□□□□□ -0.6
LIMA1-201ENST00000341247 LMAN1P49257 510 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 SP4Q02446 784 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 SLC18A3Q16572 532 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 MCTP2Q6DN12 878 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 NSMFQ6X4W1 530 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 SAMD7Q7Z3H4 446 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 HNRNPLLQ8WVV9 542 aaKnown RBP11.33□□□□□ -0.6
LIMA1-201ENST00000341247 SLC35C1Q96A29 364 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 TEKT3Q9BXF9 490 aa11.33□□□□□ -0.6
LIMA1-201ENST00000341247 SEPT11Q9NVA2 429 aaKnown RBP11.33□□□□□ -0.6
LIMA1-201ENST00000341247 KIF13BQ9NQT8 1826 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 LCA5LO95447 670 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 MAPK8IP2Q13387 824 aaPredicted RBP11.32□□□□□ -0.6
LIMA1-201ENST00000341247 MUM1L1Q5H9M0 696 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 MIER3Q7Z3K6 550 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 FRMD5Q7Z6J6 570 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 SLC5A5Q92911 643 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 GBP3Q9H0R5 595 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 KCNH7Q9NS40 1196 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 RBM12Q9NTZ6 932 aaKnown RBP11.32□□□□□ -0.6
LIMA1-201ENST00000341247 GJA3Q9Y6H8 435 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 ESYT3A0FGR9 886 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 HIP1RO75146 1068 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 ARHGAP44Q17R89 818 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 LRRN2O75325 713 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 ASNSP08243 561 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 PAFAH1B1P43034 410 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 MARSP56192 900 aaKnown RBP11.32□□□□□ -0.6
LIMA1-201ENST00000341247 GPS2Q13227 327 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 HSP90B2PQ58FF3 399 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 GBP6Q6ZN66 633 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 UBXN6Q9BZV1 441 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 MYOZ2Q9NPC6 264 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 ADAM21Q9UKJ8 722 aa11.32□□□□□ -0.6
LIMA1-201ENST00000341247 CTDP1Q9Y5B0 961 aaPredicted RBP11.32□□□□□ -0.6
LIMA1-201ENST00000341247 ZSCAN5CA6NGD5 496 aaPredicted RBP11.31□□□□□ -0.6
LIMA1-201ENST00000341247 EPHA7Q15375 998 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 SKIDA1Q1XH10 827 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.31□□□□□ -0.6
LIMA1-201ENST00000341247 CCDC43Q96MW1 224 aaKnown RBP11.31□□□□□ -0.6
LIMA1-201ENST00000341247 NACC1Q96RE7 527 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 EDEM3Q9BZQ6 932 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 FEM1BQ9UK73 627 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 K7ENM7 598 aa11.31□□□□□ -0.6
LIMA1-201ENST00000341247 EXOC3O60645 756 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms