RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 SOWAHDA6NJG2 315 aa13.71□□□□□ -0.22
USP47-202ENST00000339865 CCDC144BQ3MJ40 725 aa13.71□□□□□ -0.22
USP47-202ENST00000339865 DNAJC24Q6P3W2 148 aa13.71□□□□□ -0.22
USP47-202ENST00000339865 BZW1Q7L1Q6 419 aaKnown RBP13.71□□□□□ -0.22
USP47-202ENST00000339865 TGS1Q96RS0 853 aaKnown RBP13.71□□□□□ -0.22
USP47-202ENST00000339865 IL16Q14005 1332 aa13.71□□□□□ -0.22
USP47-202ENST00000339865 GMNCA6NCL1 334 aa13.71□□□□□ -0.22
USP47-202ENST00000339865 RASSF9O75901 435 aa13.71□□□□□ -0.22
USP47-202ENST00000339865 SRGAP2CP0DJJ0 459 aa13.71□□□□□ -0.22
USP47-202ENST00000339865 TMEM154Q6P9G4 183 aa13.71□□□□□ -0.22
USP47-202ENST00000339865 FASTKD5Q7L8L6 764 aaKnown RBP13.71□□□□□ -0.22
USP47-202ENST00000339865 UNC45BQ8IWX7 931 aa13.71□□□□□ -0.22
USP47-202ENST00000339865 TRIM25Q14258 630 aaKnown RBP13.7□□□□□ -0.22
USP47-202ENST00000339865 C8orf58Q8NAV2 365 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 ZNF556Q9HAH1 456 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 GYS1P13807 737 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 KIF23Q02241 960 aaPredicted RBP13.7□□□□□ -0.22
USP47-202ENST00000339865 TRIM16LQ309B1 348 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 NIM1KQ8IY84 436 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 ABCB6Q9NP58 842 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 SAYSD1Q9NPB0 183 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 THRAP3Q9Y2W1 955 aaKnown RBP13.7□□□□□ -0.22
USP47-202ENST00000339865 CUL1Q13616 776 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 FAM133AQ8N9E0 248 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 PPP1R14AQ96A00 147 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 IL17RAQ96F46 866 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 CXorf56Q9H5V9 222 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 SELENONQ9NZV5 590 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 KRT37O76014 449 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 GFPT2O94808 682 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 SMARCA1P28370 1054 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 ADCK5Q3MIX3 580 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 SLFNL1Q499Z3 407 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 NT5C1BQ96P26 610 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 TMEM106CQ9BVX2 250 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 SYBUQ9NX95 663 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 SLC8A2Q9UPR5 921 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 MSH6P52701 1360 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 E5RI56 91 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 ELMSAN1Q6PJG2 1045 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 DEPDC7Q96QD5 511 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 MPP6Q9NZW5 540 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 POGZQ7Z3K3 1410 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 KCNA3P22001 575 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 PLIN5Q00G26 463 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 DDIASQ8IXT1 998 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 MRPL50Q8N5N7 158 aaKnown RBP13.7□□□□□ -0.22
USP47-202ENST00000339865 CCNYL1Q8N7R7 359 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 LARP4BQ92615 738 aaKnown RBP13.7□□□□□ -0.22
USP47-202ENST00000339865 APPBP2Q92624 585 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 ZFP42Q96MM3 310 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 COL4A3BPQ9Y5P4 624 aa13.7□□□□□ -0.22
USP47-202ENST00000339865 CFAP69A5D8W1 941 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 HNRNPDLO14979 420 aaKnown RBP13.69□□□□□ -0.22
USP47-202ENST00000339865 NUP62P37198 522 aaPredicted RBP13.69□□□□□ -0.22
USP47-202ENST00000339865 KRT31Q15323 416 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 DPP9Q86TI2 863 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 NUP93Q8N1F7 819 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 ARL8AQ96BM9 186 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 VPS11Q9H270 941 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 RPAP3Q9H6T3 665 aaPredicted RBP13.69□□□□□ -0.22
USP47-202ENST00000339865 FBLN1P23142 703 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 KCTD17Q8N5Z5 321 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 COG1Q8WTW3 980 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 CLIC6Q96NY7 704 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 LSG1Q9H089 658 aaKnown RBP13.69□□□□□ -0.22
USP47-202ENST00000339865 LRRC4Q9HBW1 653 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 EXOSC4Q9NPD3 245 aaKnown RBP13.69□□□□□ -0.22
USP47-202ENST00000339865 DOLKQ9UPQ8 538 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 SULF1Q8IWU6 871 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 SMYD4Q8IYR2 804 aaPredicted RBP13.69□□□□□ -0.22
USP47-202ENST00000339865 DIS3LQ8TF46 1054 aaKnown RBP13.69□□□□□ -0.22
USP47-202ENST00000339865 NR2F2P24468 414 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 PSTPIP2Q9H939 334 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 ZNF233A6NK53 670 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 KPNA7A9QM74 516 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 PAPOLAP51003 745 aaKnown RBP13.69□□□□□ -0.22
USP47-202ENST00000339865 RABGAP1LQ5R372 815 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 EYA3Q99504 573 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 ZWILCHQ9H900 591 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 TJP3O95049 919 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 DDB1Q16531 1140 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 LONP2Q86WA8 852 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 RNF139Q8WU17 664 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 CENPTQ96BT3 561 aa13.69□□□□□ -0.22
USP47-202ENST00000339865 PRPF4O43172 522 aaKnown RBP eCLIP13.68□□□□□ -0.22
USP47-202ENST00000339865 C4BPBP20851 252 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 CYP4A11Q02928 519 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 PTGDRQ13258 359 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 TERF2Q15554 542 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 TTC8Q8TAM2 541 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 SEPT9Q9UHD8 586 aaPredicted RBP13.68□□□□□ -0.22
USP47-202ENST00000339865 APOA5Q6Q788 366 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 GALNT4Q8N4A0 578 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 DMAP1Q9NPF5 467 aaPredicted RBP13.68□□□□□ -0.22
USP47-202ENST00000339865 AKT3Q9Y243 479 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 CFAP73A6NFT4 308 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 GNPATO15228 680 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 ITGAXP20702 1163 aa13.68□□□□□ -0.22
USP47-202ENST00000339865 FAM47AQ5JRC9 791 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms