RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 TNS3Q68CZ2 1445 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 LTKP29376 864 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 SESN3P58005 492 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 WDR93Q6P2C0 686 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 UTYO14607 1347 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 MEFVO15553 781 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 DLATP10515 647 aaKnown RBP11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 CRKLP46109 303 aaKnown RBP11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 EDRF1Q3B7T1 1238 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 NLRP14Q86W24 1093 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 BBS5Q8N3I7 341 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 GPHNQ9NQX3 736 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 ZBTB5O15062 677 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 PFDN1O60925 122 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 NR1I3Q14994 352 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 WDR75Q8IWA0 830 aaKnown RBP11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 SMYD4Q8IYR2 804 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 PYROXD1Q8WU10 500 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 TRIM56Q9BRZ2 755 aaKnown RBP11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 KCND1Q9NSA2 647 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 FAM8A1Q9UBU6 413 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 LOC102724428A0A0B4J2F2 783 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 NR3C1P04150 777 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 SIK1P57059 783 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 TMED2Q15363 201 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 HIBCHQ6NVY1 386 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 LCORLQ8N3X6 602 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 FBXL16Q8N461 479 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 KCNB2Q92953 911 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 CCDC22O60826 627 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 ESRRAP11474 423 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 TRAIPQ9BWF2 469 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 GSTA1P08263 222 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 GSTA2P09210 222 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 CCZ1BP86790 482 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 CCZ1P86791 482 aaPredicted RBP11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 PRPF31Q8WWY3 499 aaKnown RBP11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 KMT5AQ9NQR1 393 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 DIP2BQ9P265 1576 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 RIMBP2O15034 1052 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 KRT1P04264 644 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 SFNP31947 248 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 TBCCQ15814 346 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 FAM83BQ5T0W9 1011 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 PPP1R2P1Q96PQ5 205 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 PKD2L1Q9P0L9 805 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 MYO3BQ8WXR4 1341 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 CAPN9O14815 690 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 BAG2O95816 211 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 PAMP19021 973 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 ZNF449Q6P9G9 518 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 KCTD6Q8NC69 237 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 FAM167AQ96KS9 214 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 CPS1P31327 1500 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 SPAG6O75602 509 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 CA4P22748 312 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 IRX1P78414 480 aaPredicted RBP11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 NOVA2Q9UNW9 492 aaKnown RBP11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 AKAP12Q02952 1782 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 KCNQ3O43525 872 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 PSAPP07602 524 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 FDX1P10109 184 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 STAT4Q14765 748 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 HOMEZQ8IX15 550 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 GLG1Q92896 1179 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 KLC4Q9NSK0 619 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 FRMPD2Q68DX3 1309 aaPredicted RBP11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 S100BP04271 92 aaPredicted RBP11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 C7orf25Q9BPX7 421 aa11.03□□□□□ -0.64
CCDC88A-202ENST00000336838 ARL4AP40617 200 aa11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 ECE1P42892 770 aa11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 SPATA4Q8NEY3 305 aa11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 C8orf37Q96NL8 207 aa11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 DNAJC5BQ9UF47 199 aa11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 ZNF609O15014 1411 aa11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 HSPA9P38646 679 aaKnown RBP11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 KNOP1Q1ED39 458 aaKnown RBP11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 SYDE2Q5VT97 1194 aa11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.02□□□□□ -0.641e-14■■■■■ 125.5
CCDC88A-202ENST00000336838 SGSM3Q96HU1 749 aa11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 TRIM62Q9BVG3 475 aa11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 FTOQ9C0B1 505 aaKnown RBP eCLIP11.02□□□□□ -0.643e-11■■■■■ 41.9
CCDC88A-202ENST00000336838 UBE2TQ9NPD8 197 aaPredicted RBP11.02□□□□□ -0.64
CCDC88A-202ENST00000336838 TMEM232C9JQI7 657 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 ASAP2O43150 1006 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 TMEM179Q6ZVK1 233 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 ATP11CQ8NB49 1132 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 TBC1D22BQ9NU19 505 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 RASA4BC9J798 803 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 H7C0C1 242 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 GYG2O15488 501 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 RASA4O43374 803 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 BMP3P12645 472 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 PRLRP16471 622 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 ATP5OP48047 213 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 PMS2P54278 862 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 MRRFQ96E11 262 aaKnown RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 SH3GL3Q99963 347 aa11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 FRMD8Q9BZ67 464 aaPredicted RBP11.02□□□□□ -0.65
CCDC88A-202ENST00000336838 LRRC53A6NM62 1247 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms