RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SLC9A7Q96T83 725 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 TMEM60Q9H2L4 133 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 TMEM150BA6NC51 233 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 NEMFO60524 1076 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 GHRP10912 638 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 MYOGP15173 224 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 U2AF2P26368 475 aaKnown RBP eCLIP17.8■□□□□ 0.44
CLN3-201ENST00000333496 LPIN1Q14693 890 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 CALCRLQ16602 461 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 FBXO47Q5MNV8 452 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 TMCO2Q7Z6W1 182 aaPredicted RBP17.8■□□□□ 0.44
CLN3-201ENST00000333496 NOSTRINQ8IVI9 506 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 GUCD1Q96NT3 240 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 NRBP2Q9NSY0 501 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 CEP131Q9UPN4 1083 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 TMEM265A0A087WTH1 108 aa17.79■□□□□ 0.44
CLN3-201ENST00000333496 MARCH6O60337 910 aa17.79■□□□□ 0.44
CLN3-201ENST00000333496 BAG4O95429 457 aaKnown RBP17.79■□□□□ 0.44
CLN3-201ENST00000333496 RPLP2P05387 115 aaKnown RBP17.79■□□□□ 0.44
CLN3-201ENST00000333496 TARBP2Q15633 366 aaKnown RBP17.79■□□□□ 0.44
CLN3-201ENST00000333496 IER5Q5VY09 327 aa17.79■□□□□ 0.44
CLN3-201ENST00000333496 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.79■□□□□ 0.44
CLN3-201ENST00000333496 NME8Q8N427 588 aa17.79■□□□□ 0.44
CLN3-201ENST00000333496 LINC01465Q8N7H1 131 aa17.79■□□□□ 0.44
CLN3-201ENST00000333496 IPO9Q96P70 1041 aaKnown RBP17.79■□□□□ 0.44
CLN3-201ENST00000333496 CEP89Q96ST8 783 aa17.79■□□□□ 0.44
CLN3-201ENST00000333496 IFIH1Q9BYX4 1025 aaKnown RBP17.79■□□□□ 0.44
CLN3-201ENST00000333496 WRAP73Q9P2S5 460 aaPredicted RBP17.79■□□□□ 0.44
CLN3-201ENST00000333496 PCDHA12Q9UN75 941 aa17.79■□□□□ 0.44
CLN3-201ENST00000333496 KDM3AQ9Y4C1 1321 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 MCM7P33993 719 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 KCNJ6P48051 423 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 PSMC5P62195 406 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 EPHA7Q15375 998 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 RAB30Q15771 203 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 XKR3Q5GH77 459 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 NCAPH2Q6IBW4 605 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 HERC6Q8IVU3 1022 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 SEPT8Q92599 483 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 SH2D3AQ9BRG2 576 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 NIFKQ9BYG3 293 aaKnown RBP17.78■□□□□ 0.44
CLN3-201ENST00000333496 CELF4Q9BZC1 486 aaKnown RBP17.78■□□□□ 0.44
CLN3-201ENST00000333496 NKX2-4Q9H2Z4 354 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 ZNF576Q9H609 170 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 TTC12Q9H892 705 aaPredicted RBP17.78■□□□□ 0.44
CLN3-201ENST00000333496 AGO3Q9H9G7 860 aaKnown RBP17.78■□□□□ 0.44
CLN3-201ENST00000333496 CDHR5Q9HBB8 845 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 PCDHA11Q9Y5I1 949 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 TRPV2Q9Y5S1 764 aa17.78■□□□□ 0.44
CLN3-201ENST00000333496 TTC3P53804 2025 aa17.77■□□□□ 0.44
CLN3-201ENST00000333496 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.77■□□□□ 0.44
CLN3-201ENST00000333496 EFCAB14O75071 495 aa17.77■□□□□ 0.44
CLN3-201ENST00000333496 P4HBP07237 508 aaKnown RBP17.77■□□□□ 0.44
CLN3-201ENST00000333496 TXKP42681 527 aa17.77■□□□□ 0.44
CLN3-201ENST00000333496 QARSP47897 775 aaKnown RBP17.77■□□□□ 0.44
CLN3-201ENST00000333496 CUL4AQ13619 759 aa17.77■□□□□ 0.44
CLN3-201ENST00000333496 ANO5Q75V66 913 aa17.77■□□□□ 0.44
CLN3-201ENST00000333496 RGL1Q9NZL6 768 aa17.77■□□□□ 0.44
CLN3-201ENST00000333496 SEPT9Q9UHD8 586 aaPredicted RBP17.77■□□□□ 0.44
CLN3-201ENST00000333496 MSRAQ9UJ68 235 aa17.77■□□□□ 0.44
CLN3-201ENST00000333496 KIF3AQ9Y496 699 aa17.77■□□□□ 0.44
CLN3-201ENST00000333496 PRUNE2Q8WUY3 3088 aa17.77■□□□□ 0.44
CLN3-201ENST00000333496 MAGEB2O15479 319 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 TOB1P50616 345 aaPredicted RBP17.76■□□□□ 0.43
CLN3-201ENST00000333496 CLCN3P51790 818 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 GNL2Q13823 731 aaKnown RBP17.76■□□□□ 0.43
CLN3-201ENST00000333496 NBR1Q14596 966 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 ZNF174Q15697 407 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 MTERF2Q49AM1 385 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 EFCAB12Q6NXP0 572 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 TSHZ1Q6ZSZ6 1077 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 LRRC71Q8N4P6 559 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 METTL13Q8N6R0 699 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 APBB2Q92870 758 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 DYDC2Q96IM9 177 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 SMC3Q9UQE7 1217 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.76■□□□□ 0.43
CLN3-201ENST00000333496 SQORQ9Y6N5 450 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 M0QZ92 97 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 VTNP04004 478 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 GRIN2CQ14957 1233 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 TTC38Q5R3I4 469 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 LXNQ9BS40 222 aa17.76■□□□□ 0.43
CLN3-201ENST00000333496 DDX11L8A8MPP1 907 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 GPR32O75388 356 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 SLITRK3O94933 977 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 ARHGEF15O94989 841 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 GJB5O95377 273 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 CD52P31358 61 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 TRAPPC10P48553 1259 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 CYP4A11Q02928 519 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 ORC2Q13416 577 aaPredicted RBP17.75■□□□□ 0.43
CLN3-201ENST00000333496 CTTNQ14247 550 aaKnown RBP17.75■□□□□ 0.43
CLN3-201ENST00000333496 PLA2G4FQ68DD2 849 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 C4orf32Q8N8J7 132 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 TMEM40Q8WWA1 233 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 PPP1R16BQ96T49 567 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 CDX2Q99626 313 aaPredicted RBP17.75■□□□□ 0.43
CLN3-201ENST00000333496 REV3LO60673 3130 aa17.75■□□□□ 0.43
CLN3-201ENST00000333496 IGKV6-21A0A0C4DH24 114 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms