RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 HAUS3Q68CZ6 603 aa17.79■□□□□ 0.44
CCDC28A-201ENST00000332797 FOXD4L3Q6VB84 417 aaPredicted RBP17.79■□□□□ 0.44
CCDC28A-201ENST00000332797 DEFB128Q7Z7B8 93 aa17.79■□□□□ 0.44
CCDC28A-201ENST00000332797 TUFT1Q9NNX1 390 aa17.79■□□□□ 0.44
CCDC28A-201ENST00000332797 COLQQ9Y215 455 aaPredicted RBP17.79■□□□□ 0.44
CCDC28A-201ENST00000332797 SMIM35A0A1B0GVV1 85 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 PP2D1A8MPX8 630 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 RSPH10B2B2RC85 870 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 CAND2O75155 1236 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 RSPH10BP0C881 870 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 ACRP10323 421 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 BMP8BP34820 402 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 CCT6AP40227 531 aaKnown RBP17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 TBC1D8BQ0IIM8 1120 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 TARBP2Q15633 366 aaKnown RBP17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 TRAF7Q6Q0C0 670 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 CATSPER3Q86XQ3 398 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 METTL13Q8N6R0 699 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 SNX29Q8TEQ0 813 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 USP28Q96RU2 1077 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 POLR3CQ9BUI4 534 aaPredicted RBP17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 IL23AQ9NPF7 189 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 SCN5AQ14524 2016 aa17.78■□□□□ 0.44
CCDC28A-201ENST00000332797 ZBTB39O15060 712 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 MAGEB2O15479 319 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 LYPLA2O95372 231 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 SPATA31C1P0DKV0 1188 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 RFC2P35250 354 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 ANP32AP39687 249 aaKnown RBP17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 NPEPPSP55786 919 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 PTPAQ15257 358 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 POTEGQ6S5H5 508 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 OTUD6AQ7L8S5 288 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 RPAINQ86UA6 219 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 CEP170P1Q96L14 293 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 ZNF396Q96N95 335 aaPredicted RBP17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 PRO3102Q9H379 93 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 CYP26B1Q9NR63 512 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 DAXXQ9UER7 740 aaPredicted RBP17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 STK24Q9Y6E0 443 aa17.77■□□□□ 0.44
CCDC28A-201ENST00000332797 RPLP2P05387 115 aaKnown RBP17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 RPA1P27694 616 aa17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 CDC25AP30304 524 aa17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 CLCN3P51790 818 aa17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 MRPS6P82932 125 aaKnown RBP17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 TMEM62Q0P6H9 643 aa17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 XKR9Q5GH70 373 aa17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 KRT79Q5XKE5 535 aa17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 EFCAB12Q6NXP0 572 aa17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 RPUSD2Q8IZ73 545 aaKnown RBP17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 LRRC71Q8N4P6 559 aa17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 ZNF579Q8NAF0 562 aaKnown RBP17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 PIGOQ8TEQ8 1089 aa17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 CCDC43Q96MW1 224 aaKnown RBP17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 SUGCTQ9HAC7 445 aa17.76■□□□□ 0.43
CCDC28A-201ENST00000332797 A0A087WWV3 80 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 RBAK-RBAKDNI3L0D1 243 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 BRD1O95696 1058 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 MARCKSP29966 332 aaPredicted RBP17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 MBTPS1Q14703 1052 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 PSRC1Q6PGN9 363 aaPredicted RBP17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 C16orf59Q7L2K0 433 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 KIAA0319LQ8IZA0 1049 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 CEP89Q96ST8 783 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 TFIP11Q9UBB9 837 aaKnown RBP17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 CDY2AQ9Y6F7 541 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 ARID2Q68CP9 1835 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 M0QZ92 97 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 NBNO60934 754 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 PARNO95453 639 aaKnown RBP17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 CHRNA1P02708 482 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 TMOD1P28289 359 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 POLGP54098 1239 aaPredicted RBP17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 GRIN1Q05586 938 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 MGAT3Q09327 533 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 STK38Q15208 465 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 ZRSR1Q15695 479 aaKnown RBP17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 ECM1Q16610 540 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 FAM26DQ5JW98 314 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 C9orf50Q5SZB4 431 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 IER5Q5VY09 327 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 TDHQ8IZJ6 230 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 NME8Q8N427 588 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 LINC01465Q8N7H1 131 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 VWCEQ96DN2 955 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 MAP7D2Q96T17 732 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 PPP1R16BQ96T49 567 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 BMP2KQ9NSY1 1161 aaPredicted RBP17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 ANKEF1Q9NU02 776 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 AKT3Q9Y243 479 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 ZDHHC9Q9Y397 364 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 PPME1Q9Y570 386 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 TRPV2Q9Y5S1 764 aa17.75■□□□□ 0.43
CCDC28A-201ENST00000332797 MAFO75444 373 aaPredicted RBP17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 VTNP04004 478 aa17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 PFKMP08237 780 aa17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 MUTP22033 750 aa17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 NASPP49321 788 aaPredicted RBP17.74■□□□□ 0.43
CCDC28A-201ENST00000332797 GPNMBQ14956 572 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms