RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 KIF2BQ8N4N8 673 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 ZMYND12Q9H0C1 365 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 OSGEPQ9NPF4 335 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 A1CFQ9NQ94 594 aaKnown RBP8.58□□□□□ -1.04
VMA21-201ENST00000330374 CHORDC1Q9UHD1 332 aaPredicted RBP8.58□□□□□ -1.04
VMA21-201ENST00000330374 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.58□□□□□ -1.04
VMA21-201ENST00000330374 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.58□□□□□ -1.04
VMA21-201ENST00000330374 TAF1P21675 1872 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 F8VZ95 297 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 F8W031 263 aaPredicted RBP8.58□□□□□ -1.04
VMA21-201ENST00000330374 NTSR2O95665 410 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 GCFC2P16383 781 aaKnown RBP8.58□□□□□ -1.04
VMA21-201ENST00000330374 MMP14P50281 582 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 ELF3P78545 371 aaPredicted RBP8.58□□□□□ -1.04
VMA21-201ENST00000330374 PLCB4Q15147 1175 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 AADACL2Q6P093 401 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 GPBP1Q86WP2 473 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 DYDC1Q8WWB3 177 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 FMO2Q99518 471 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 PRMT1Q99873 361 aaKnown RBP8.58□□□□□ -1.04
VMA21-201ENST00000330374 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.58□□□□□ -1.041e-6■■■■■ 46.6
VMA21-201ENST00000330374 MYH7BA7E2Y1 1941 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 MYH1P12882 1939 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 MYH4Q9Y623 1939 aa8.58□□□□□ -1.04
VMA21-201ENST00000330374 ZNF804BA4D1E1 1349 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 PVALEFA0A1B0GWK0 134 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 GFPT2O94808 682 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 ATP6V1G2O95670 118 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 UBE4AQ14139 1066 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 C12orf60Q5U649 245 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 NAIF1Q69YI7 327 aaPredicted RBP8.57□□□□□ -1.04
VMA21-201ENST00000330374 LRRC47Q8N1G4 583 aaKnown RBP8.57□□□□□ -1.04
VMA21-201ENST00000330374 CCDC26Q8TAB7 109 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 NSMCE1Q8WV22 266 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 PAGR1Q9BTK6 254 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 CCDC87Q9NVE4 849 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 BCORQ6W2J9 1755 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 A0A1B0GUA9 196 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 MEIS1O00470 390 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 CLIC2O15247 247 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 MAEAQ7L5Y9 396 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 ANKS4BQ8N8V4 417 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 SCFD2Q8WU76 684 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 PRCCQ92733 491 aaPredicted RBP8.57□□□□□ -1.04
VMA21-201ENST00000330374 RAB34Q9BZG1 259 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 NAGPAQ9UK23 515 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 HDAC9Q9UKV0 1011 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 SLIT2O94813 1529 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 POTEB3A0JP26 581 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 CCT8L1PA6NM43 557 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 FOXO6A8MYZ6 492 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 POTECB2RU33 542 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 RBAK-RBAKDNI3L0D1 243 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 KIF1CO43896 1103 aaKnown RBP8.57□□□□□ -1.04
VMA21-201ENST00000330374 UPP2O95045 317 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 STAT3P40763 770 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 DRP2Q13474 957 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 MTMR3Q13615 1198 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 GRIK5Q16478 980 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 PPP4R4Q6NUP7 873 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 POTEBQ6S5H4 581 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 TPCN2Q8NHX9 752 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 CCT6BQ92526 530 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 PBKQ96KB5 322 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 EYA3Q99504 573 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 RIC8AQ9NPQ8 531 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 TMOD4Q9NZQ9 345 aa8.57□□□□□ -1.04
VMA21-201ENST00000330374 PALM3A6NDB9 673 aaPredicted RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 WLSQ5T9L3 541 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 NUCKS1Q9H1E3 243 aaKnown RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 IKZF4Q9H2S9 585 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 BCAS3Q9H6U6 928 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 EMILIN3Q9NT22 766 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 ABCF3Q9NUQ8 709 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 INTS9Q9NV88 658 aaKnown RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 SAMD15Q9P1V8 674 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 STK17AQ9UEE5 414 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 DBR1Q9UK59 544 aaKnown RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 UBR2Q8IWV8 1755 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 ALS2Q96Q42 1657 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 CETN3O15182 167 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 RGS16O15492 202 aaPredicted RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 H2AFZP0C0S5 128 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 UCHL3P15374 230 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 FGFR4P22455 802 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 ZKSCAN8Q15776 578 aaPredicted RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 GALNT17Q6IS24 598 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 H2AFVQ71UI9 128 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 DAGLBQ8NCG7 672 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 RSRC1Q96IZ7 334 aaKnown RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 AJAP1Q9UKB5 411 aaPredicted RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 COL5A2P05997 1499 aaPredicted RBP8.56□□□□□ -1.04
VMA21-201ENST00000330374 CAMTA2O94983 1202 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 SLC8A1P32418 973 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 CASP5P51878 434 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 KCNJ2P63252 427 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 EXOC3L4Q17RC7 722 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 DENND2CQ68D51 928 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 BRINP3Q76B58 766 aa8.56□□□□□ -1.04
VMA21-201ENST00000330374 TRIM59Q8IWR1 403 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms