RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 TJP1Q07157 1748 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 NVLO15381 856 aaKnown RBP12.84□□□□□ -0.35
SHMT2-201ENST00000328923 AKR1B10O60218 316 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 RANBP6O60518 1105 aaKnown RBP12.84□□□□□ -0.35
SHMT2-201ENST00000328923 FOXO4P98177 505 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 THOC7Q6I9Y2 204 aaKnown RBP12.84□□□□□ -0.35
SHMT2-201ENST00000328923 ARHGAP27Q6ZUM4 889 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 ZC3H18Q86VM9 953 aaKnown RBP12.84□□□□□ -0.35
SHMT2-201ENST00000328923 SMYD4Q8IYR2 804 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-201ENST00000328923 DEPTORQ8TB45 409 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 PIGOQ8TEQ8 1089 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 NELFBQ8WX92 580 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 PNMA2Q9UL42 364 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 SYNPO2Q9UMS6 1093 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 RABL2BQ9UNT1 228 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 TMED5Q9Y3A6 229 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 ZNF711Q9Y462 761 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 MYH2Q9UKX2 1941 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 PPP1R3GB7ZBB8 358 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 EYA2O00167 538 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 NFKBIAP25963 317 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 TIMM10P62072 90 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 RASSF7Q02833 373 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 SSRP1Q08945 709 aaKnown RBP12.84□□□□□ -0.35
SHMT2-201ENST00000328923 HLTFQ14527 1009 aaKnown RBP eCLIP12.84□□□□□ -0.35
SHMT2-201ENST00000328923 TBC1D9BQ66K14 1250 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 ATXN2LQ8WWM7 1075 aaKnown RBP12.84□□□□□ -0.35
SHMT2-201ENST00000328923 PHKBQ93100 1093 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 PPP2R3CQ969Q6 453 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 CENPTQ96BT3 561 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 CENPOQ9BU64 300 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 ZBTB3Q9H5J0 574 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 PDP2Q9P2J9 529 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 CTNNAL1Q9UBT7 734 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 CROTQ9UKG9 612 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 ITM2BQ9Y287 266 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 HYOU1Q9Y4L1 999 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 BCL9O00512 1426 aa12.84□□□□□ -0.35
SHMT2-201ENST00000328923 SIGLEC16A6NMB1 481 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 ZPR1O75312 459 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 MOCS3O95396 460 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 UBTFL6P0CB48 400 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-201ENST00000328923 IDO1P14902 403 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 GNAT2P19087 354 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 HOXA10P31260 410 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-201ENST00000328923 GRIN1Q05586 938 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 ITGA7Q13683 1181 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 KCTD19Q17RG1 926 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-201ENST00000328923 WASHC4Q2M389 1173 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 UBLCP1Q8WVY7 318 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-201ENST00000328923 KRT12Q99456 494 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 SELENOSQ9BQE4 189 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 CNOT10Q9H9A5 744 aaKnown RBP12.83□□□□□ -0.36
SHMT2-201ENST00000328923 KAT6BQ8WYB5 2073 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 GOLGA8AA7E2F4 631 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 SART1O43290 800 aaKnown RBP12.83□□□□□ -0.36
SHMT2-201ENST00000328923 IFNAR1P17181 557 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 TCP1P17987 556 aaKnown RBP12.83□□□□□ -0.36
SHMT2-201ENST00000328923 PDE6CP51160 858 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 MTTPP55157 894 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 VPS72Q15906 364 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 KRT71Q3SY84 523 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 BARGINQ6ZT62 677 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 MAP7D3Q8IWC1 876 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 DNAJC10Q8IXB1 793 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 TTC8Q8TAM2 541 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 GATA6Q92908 595 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 DNAJC1Q96KC8 554 aaKnown RBP12.83□□□□□ -0.36
SHMT2-201ENST00000328923 DNAJC7Q99615 494 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 CDCA7Q9BWT1 371 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-201ENST00000328923 FAM217BQ9NTX9 383 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-201ENST00000328923 LRWD1Q9UFC0 647 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 USP20Q9Y2K6 914 aa12.83□□□□□ -0.36
SHMT2-201ENST00000328923 SNX3O60493 162 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 ZCCHC18P0CG32 403 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 LIFRP42702 1097 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 PSMD7P51665 324 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 COPB1P53618 953 aaKnown RBP12.82□□□□□ -0.36
SHMT2-201ENST00000328923 RTP1P59025 263 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 GPSM2P81274 684 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 DPYDQ12882 1025 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 TTLL12Q14166 644 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-201ENST00000328923 DAAM2Q86T65 1068 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 DIS3L2Q8IYB7 885 aaKnown RBP12.82□□□□□ -0.36
SHMT2-201ENST00000328923 SEPT12Q8IYM1 358 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 PPP1R14BQ96C90 147 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 PRMT1Q99873 361 aaKnown RBP12.82□□□□□ -0.36
SHMT2-201ENST00000328923 A6NJR5 290 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 GPAA1O43292 621 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 RAD21O60216 631 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 PRLRP16471 622 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 RASA1P20936 1047 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 IFNAR2P48551 515 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 TRPC1P48995 793 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 SH3D19Q5HYK7 790 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 SYDE2Q5VT97 1194 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 SLC2A7Q6PXP3 512 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 GIGYF2Q6Y7W6 1299 aaKnown RBP12.82□□□□□ -0.36
SHMT2-201ENST00000328923 CYB5R4Q7L1T6 521 aa12.82□□□□□ -0.36
SHMT2-201ENST00000328923 MICU3Q86XE3 530 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms