RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 PLCB2Q00722 1185 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 KCNB1Q14721 858 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 ARSHQ5FYA8 562 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 HERC4Q5GLZ8 1057 aaPredicted RBP11.13□□□□□ -0.63
HMGB3-201ENST00000325307 RINT1Q6NUQ1 792 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 OR6J1Q8NGC5 347 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 CEP170P1Q96L14 293 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 REEP2Q9BRK0 252 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 CFHR5Q9BXR6 569 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 GDAQ9Y2T3 454 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 ZNF236Q9UL36 1845 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 PVALEFA0A1B0GWK0 134 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 RBM47A0AV96 593 aaKnown RBP11.13□□□□□ -0.63
HMGB3-201ENST00000325307 GOLGA6L19H0YKK7 550 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 ATG7O95352 703 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 ARHGAP1Q07960 439 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 DUSP28Q4G0W2 176 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 ZNF658Q5TYW1 1059 aaPredicted RBP11.13□□□□□ -0.63
HMGB3-201ENST00000325307 CNNM4Q6P4Q7 775 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 TRIM50Q86XT4 487 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 AOPEPQ8N6M6 819 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 AFG1LQ8WV93 481 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 HPS3Q969F9 1004 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 TBC1D7Q9P0N9 293 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 VGLL3A8MV65 326 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 RHOBTB3O94955 611 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 XRCC5P13010 732 aaKnown RBP11.12□□□□□ -0.63
HMGB3-201ENST00000325307 CNGA1P29973 690 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 RARRES1P49788 294 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 COASYQ13057 564 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 IQCB1Q15051 598 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 DNAJC19Q96DA6 116 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 SLC39A2Q9NP94 309 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 DBR1Q9UK59 544 aaKnown RBP11.12□□□□□ -0.63
HMGB3-201ENST00000325307 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.12□□□□□ -0.63
HMGB3-201ENST00000325307 DYNC1LI2O43237 492 aaPredicted RBP11.12□□□□□ -0.63
HMGB3-201ENST00000325307 FKTNO75072 461 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 FAM13AO94988 1023 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 STIM1Q13586 685 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 GIT2Q14161 759 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 MTERF2Q49AM1 385 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 XKR3Q5GH77 459 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 ANO5Q75V66 913 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 ERO1AQ96HE7 468 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 ANKEF1Q9NU02 776 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 IGSF9BQ9UPX0 1349 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 CAP1Q01518 475 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 MAP2K1Q02750 393 aaPredicted RBP11.12□□□□□ -0.63
HMGB3-201ENST00000325307 RAET1EQ8TD07 263 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 TRIB2Q92519 343 aa11.12□□□□□ -0.63
HMGB3-201ENST00000325307 LENG1Q96BZ8 264 aaPredicted RBP11.12□□□□□ -0.63
HMGB3-201ENST00000325307 MAFBQ9Y5Q3 323 aaPredicted RBP11.12□□□□□ -0.63
HMGB3-201ENST00000325307 SFI1A8K8P3 1242 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 RSPH10B2B2RC85 870 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 NKRFO15226 690 aaKnown RBP eCLIP11.11□□□□□ -0.631e-7■■■■□ 25.2
HMGB3-201ENST00000325307 OATP04181 439 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 RSPH10BP0C881 870 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 ELNP15502 786 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 DMTNQ08495 405 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 ARHGEF6Q15052 776 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 C1orf186Q6ZWK4 172 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 PPTC7Q8NI37 304 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 NRBP2Q9NSY0 501 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 SRRDQ9UH36 339 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 FAM184BQ9ULE4 1060 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 ZSWIM8A7E2V4 1837 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 ZNF865P0CJ78 1059 aaPredicted RBP11.11□□□□□ -0.63
HMGB3-201ENST00000325307 STX17P56962 302 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 CHMP4BP1P59074 171 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 C1QTNF8P60827 252 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 STK4Q13043 487 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 FAM26FQ5R3K3 315 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 TRMT44Q8IYL2 757 aaKnown RBP11.11□□□□□ -0.63
HMGB3-201ENST00000325307 MYCT1Q8N699 235 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 ZNF296Q8WUU4 475 aaPredicted RBP11.11□□□□□ -0.63
HMGB3-201ENST00000325307 PCYT2Q99447 389 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 SAGE1Q9NXZ1 904 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 KCND2Q9NZV8 630 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 CTNND2Q9UQB3 1225 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 COL4A3BPQ9Y5P4 624 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 DYNC1I1O14576 645 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 TLK2Q86UE8 772 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 AP5M1Q9H0R1 490 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 SMARCAD1Q9H4L7 1026 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 TRPC6Q9Y210 931 aa11.11□□□□□ -0.63
HMGB3-201ENST00000325307 IGKV6D-21A0A0A0MT36 114 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 ADCY6O43306 1168 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 HIP1RO75146 1068 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 CD44P16070 742 aaKnown RBP11.1□□□□□ -0.63
HMGB3-201ENST00000325307 PRCPP42785 496 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 TPD52L1Q16890 204 aaPredicted RBP11.1□□□□□ -0.63
HMGB3-201ENST00000325307 FAM102BQ5T8I3 360 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 SFR1Q86XK3 245 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 DHX40Q8IX18 779 aaKnown RBP11.1□□□□□ -0.63
HMGB3-201ENST00000325307 GTPBP4Q9BZE4 634 aaKnown RBP11.1□□□□□ -0.63
HMGB3-201ENST00000325307 CYP26B1Q9NR63 512 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 SMTNL1A8MU46 457 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 PSMA7O14818 248 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 ADCY3O60266 1144 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 ZNF286BP0CG31 522 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms