RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 ZNF484Q5JVG2 852 aa18.41■□□□□ 0.54
LSM1-201ENST00000311351 TSHZ1Q6ZSZ6 1077 aa18.41■□□□□ 0.54
LSM1-201ENST00000311351 CCDC83Q8IWF9 413 aa18.41■□□□□ 0.54
LSM1-201ENST00000311351 BBXQ8WY36 941 aaPredicted RBP18.41■□□□□ 0.54
LSM1-201ENST00000311351 PPM1EQ8WY54 764 aa18.41■□□□□ 0.54
LSM1-201ENST00000311351 RAD9AQ99638 391 aa18.41■□□□□ 0.54
LSM1-201ENST00000311351 AGO3Q9H9G7 860 aaKnown RBP18.41■□□□□ 0.54
LSM1-201ENST00000311351 NLRC5Q86WI3 1866 aa18.41■□□□□ 0.54
LSM1-201ENST00000311351 A0A0C4DFX4 3053 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 M0QZ92 97 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 UPP2O95045 317 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 RPLP2P05387 115 aaKnown RBP18.4■□□□□ 0.54
LSM1-201ENST00000311351 CD52P31358 61 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 KRT2P35908 639 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 PRKCEQ02156 737 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 IER5Q5VY09 327 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 B3GNT9Q6UX72 402 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 MIER3Q7Z3K6 550 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.4■□□□□ 0.54
LSM1-201ENST00000311351 TNFRSF25Q93038 417 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 PPP1R16BQ96T49 567 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 LIMCH1Q9UPQ0 1083 aa18.4■□□□□ 0.54
LSM1-201ENST00000311351 CUL9Q8IWT3 2517 aa18.39■□□□□ 0.53
LSM1-201ENST00000311351 LINC01553A4QN01 128 aa18.39■□□□□ 0.53
LSM1-201ENST00000311351 CCNT1O60563 726 aaKnown RBP18.39■□□□□ 0.53
LSM1-201ENST00000311351 OATP04181 439 aa18.39■□□□□ 0.53
LSM1-201ENST00000311351 SFNP31947 248 aa18.39■□□□□ 0.53
LSM1-201ENST00000311351 KIAA0319LQ8IZA0 1049 aa18.39■□□□□ 0.53
LSM1-201ENST00000311351 LINC01599Q8WXQ3 324 aa18.39■□□□□ 0.53
LSM1-201ENST00000311351 FAM167AQ96KS9 214 aa18.39■□□□□ 0.53
LSM1-201ENST00000311351 CELF4Q9BZC1 486 aaKnown RBP18.39■□□□□ 0.53
LSM1-201ENST00000311351 MTUS1Q9ULD2 1270 aa18.39■□□□□ 0.53
LSM1-201ENST00000311351 GINS2Q9Y248 185 aa18.39■□□□□ 0.53
LSM1-201ENST00000311351 TTC3P53804 2025 aa18.39■□□□□ 0.53
LSM1-201ENST00000311351 REV3LO60673 3130 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 MMP1P03956 469 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 GCFC2P16383 781 aaKnown RBP18.38■□□□□ 0.53
LSM1-201ENST00000311351 CLCN3P51790 818 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 HTRA4P83105 476 aaPredicted RBP18.38■□□□□ 0.53
LSM1-201ENST00000311351 TMEM266Q2M3C6 531 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 KRT40Q6A162 431 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 PPP4R3AQ6IN85 833 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 DIS3L2Q8IYB7 885 aaKnown RBP18.38■□□□□ 0.53
LSM1-201ENST00000311351 MICALL1Q8N3F8 863 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 TOP1MTQ969P6 601 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 CDHR5Q9HBB8 845 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 BRMS1Q9HCU9 246 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 KCNMB3Q9NPA1 279 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 PRDM6Q9NQX0 595 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 VAV3Q9UKW4 847 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 COL4A6Q14031 1691 aa18.38■□□□□ 0.53
LSM1-201ENST00000311351 TMEM150BA6NC51 233 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 BTBD18B2RXH4 712 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 VTNP04004 478 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 RBM25P49756 843 aaKnown RBP18.37■□□□□ 0.53
LSM1-201ENST00000311351 GUCY1B3Q02153 619 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 CCDC85BQ15834 202 aaPredicted RBP18.37■□□□□ 0.53
LSM1-201ENST00000311351 NME8Q8N427 588 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 METTL13Q8N6R0 699 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 RDM1Q8NG50 284 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 GDPD5Q8WTR4 605 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 TMEM40Q8WWA1 233 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 PADI3Q9ULW8 664 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 CEP131Q9UPN4 1083 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 INSL6Q9Y581 213 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 KDM3AQ9Y4C1 1321 aa18.37■□□□□ 0.53
LSM1-201ENST00000311351 EML1O00423 815 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 WNT7AO00755 349 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 PAK2Q13177 524 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 GRB10Q13322 594 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 TRIM29Q14134 588 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 KIZQ2M2Z5 673 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 RALGAPA2Q2PPJ7 1873 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 LRRC71Q8N4P6 559 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 BANK1Q8NDB2 785 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 SP7Q8TDD2 431 aaPredicted RBP18.36■□□□□ 0.53
LSM1-201ENST00000311351 HAS1Q92839 578 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 TGS1Q96RS0 853 aaKnown RBP18.36■□□□□ 0.53
LSM1-201ENST00000311351 YME1L1Q96TA2 773 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 C17orf80Q9BSJ5 609 aa18.36■□□□□ 0.53
LSM1-201ENST00000311351 SEPT9Q9UHD8 586 aaPredicted RBP18.36■□□□□ 0.53
LSM1-201ENST00000311351 ENPP3O14638 875 aa18.35■□□□□ 0.53
LSM1-201ENST00000311351 ERVK-21P61565 698 aa18.35■□□□□ 0.53
LSM1-201ENST00000311351 PPP2R5CQ13362 524 aa18.35■□□□□ 0.53
LSM1-201ENST00000311351 LINC01465Q8N7H1 131 aa18.35■□□□□ 0.53
LSM1-201ENST00000311351 OSMRQ99650 979 aa18.35■□□□□ 0.53
LSM1-201ENST00000311351 NAP1L4Q99733 375 aaKnown RBP18.35■□□□□ 0.53
LSM1-201ENST00000311351 SH2D3AQ9BRG2 576 aa18.35■□□□□ 0.53
LSM1-201ENST00000311351 NRBP2Q9NSY0 501 aa18.35■□□□□ 0.53
LSM1-201ENST00000311351 NOC2LQ9Y3T9 749 aaKnown RBP18.35■□□□□ 0.53
LSM1-201ENST00000311351 MTCH2Q9Y6C9 303 aa18.35■□□□□ 0.53
LSM1-201ENST00000311351 SQORQ9Y6N5 450 aa18.35■□□□□ 0.53
LSM1-201ENST00000311351 ARID2Q68CP9 1835 aa18.35■□□□□ 0.53
LSM1-201ENST00000311351 KIAA1671Q9BY89 1806 aa18.35■□□□□ 0.53
LSM1-201ENST00000311351 LPXNO60711 386 aa18.34■□□□□ 0.53
LSM1-201ENST00000311351 STBD1O95210 358 aa18.34■□□□□ 0.53
LSM1-201ENST00000311351 MTERF2Q49AM1 385 aa18.34■□□□□ 0.53
LSM1-201ENST00000311351 EFCAB12Q6NXP0 572 aa18.34■□□□□ 0.53
LSM1-201ENST00000311351 RTN4RL1Q86UN2 441 aaPredicted RBP18.34■□□□□ 0.53
LSM1-201ENST00000311351 ZNF668Q96K58 619 aaPredicted RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms