RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PIM2Q9P1W9 311 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 DR1Q01658 176 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 MAP7Q14244 749 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 STRIP1Q5VSL9 837 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 FAM47EQ6ZV65 393 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 ARMC2Q8NEN0 867 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 USP54Q70EL1 1684 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 BMP3P12645 472 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 SNAP25P60880 206 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 PACS2Q86VP3 889 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 FNBP1Q96RU3 617 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 SEC23AQ15436 765 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 CAPRIN2Q6IMN6 1127 aaKnown RBP16.62■□□□□ 0.25
SHH-201ENST00000297261 C16orf86Q6ZW13 317 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 RTFDC1Q9BY42 306 aaPredicted RBP16.62■□□□□ 0.25
SHH-201ENST00000297261 DDX39AO00148 427 aaKnown RBP16.61■□□□□ 0.25
SHH-201ENST00000297261 ATF2P15336 505 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 PDE6CP51160 858 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 SEPT6Q14141 434 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 TMEM179Q6ZVK1 233 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 PPM1KQ8N3J5 372 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 PDCD7Q8N8D1 485 aaKnown RBP16.61■□□□□ 0.25
SHH-201ENST00000297261 AK8Q96MA6 479 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 PHF20Q9BVI0 1012 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 RIC8AQ9NPQ8 531 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 FBXL5Q9UKA1 691 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 ENO4A6NNW6 628 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 MYL1P05976 194 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 PABPC4Q13310 644 aaKnown RBP eCLIP16.61■□□□□ 0.25
SHH-201ENST00000297261 NCAPHQ15003 741 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 NTRK3Q16288 839 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 WDR44Q5JSH3 913 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 CIAPIN1Q6FI81 312 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 DCUN1D2Q6PH85 259 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 DEFB132Q7Z7B7 95 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 SCOCQ9UIL1 159 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 BCL9LQ86UU0 1499 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 PNMA6FA0A0J9YX94 578 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 LAD1O00515 517 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 TRIP13Q15645 432 aaPredicted RBP16.61■□□□□ 0.25
SHH-201ENST00000297261 LIN9Q5TKA1 542 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 NSMFQ6X4W1 530 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 OR2W6PQ8NHA6 318 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 TAF1DQ9H5J8 278 aaPredicted RBP16.61■□□□□ 0.25
SHH-201ENST00000297261 METTL14Q9HCE5 456 aaKnown RBP16.61■□□□□ 0.25
SHH-201ENST00000297261 BARHL2Q9NY43 387 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 INTUQ9ULD6 942 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 CAPN11Q9UMQ6 739 aa16.61■□□□□ 0.25
SHH-201ENST00000297261 hCG_1984214I3L0E3 225 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 PFDN1O60925 122 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 ZRANB2O95218 330 aaKnown RBP eCLIP16.6■□□□□ 0.25
SHH-201ENST00000297261 COG7P83436 770 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 RSRC2Q7L4I2 434 aaKnown RBP16.6■□□□□ 0.25
SHH-201ENST00000297261 ZNF713Q8N859 430 aaPredicted RBP16.6■□□□□ 0.25
SHH-201ENST00000297261 ZIM3Q96PE6 472 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 PDS5AQ29RF7 1337 aaKnown RBP16.6■□□□□ 0.25
SHH-201ENST00000297261 PHF20L1A8MW92 1017 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 CCDC188H7C350 402 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 CLIC2O15247 247 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 CARSP49589 748 aaKnown RBP16.6■□□□□ 0.25
SHH-201ENST00000297261 LRRC14Q15048 493 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 CDC37Q16543 378 aaPredicted RBP16.6■□□□□ 0.25
SHH-201ENST00000297261 MAP7D1Q3KQU3 841 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 ARL6IP4Q66PJ3 421 aaKnown RBP16.6■□□□□ 0.25
SHH-201ENST00000297261 PROCA1Q8NCQ7 364 aaPredicted RBP16.6■□□□□ 0.25
SHH-201ENST00000297261 DDX23Q9BUQ8 820 aaKnown RBP16.6■□□□□ 0.25
SHH-201ENST00000297261 CNTNAP5Q8WYK1 1306 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 ARFGEF2Q9Y6D5 1785 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 TMOD1P28289 359 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 ARHGEF18Q6ZSZ5 1173 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 CCHCR1Q8TD31 782 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 CHMP6Q96FZ7 201 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 MTMR4Q9NYA4 1195 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 FERMT1Q9BQL6 677 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 KDM3AQ9Y4C1 1321 aa16.6■□□□□ 0.25
SHH-201ENST00000297261 IL1R1P14778 569 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 ATF7P17544 494 aaPredicted RBP16.59■□□□□ 0.25
SHH-201ENST00000297261 GRIK5Q16478 980 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 C6orf118Q5T5N4 469 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 P3H4Q92791 437 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 ANKZF1Q9H8Y5 726 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 LIMA1Q9UHB6 759 aaKnown RBP16.59■□□□□ 0.25
SHH-201ENST00000297261 ZNF148Q9UQR1 794 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 USP17L10C9JJH3 530 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 DAPK3O43293 454 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 RCN2Q14257 317 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 TMED2Q15363 201 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 HHIPL2Q6UWX4 724 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 ARHGAP27Q6ZUM4 889 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 MSANTD4Q8NCY6 345 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 MAIP1Q8WWC4 291 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 GEMIN8Q9NWZ8 242 aaKnown RBP16.59■□□□□ 0.25
SHH-201ENST00000297261 WDR91A4D1P6 747 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 TTC16Q8NEE8 873 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 MAK16Q9BXY0 300 aaKnown RBP16.59■□□□□ 0.25
SHH-201ENST00000297261 RBM12Q9NTZ6 932 aaKnown RBP16.59■□□□□ 0.25
SHH-201ENST00000297261 TYW1Q9NV66 732 aaKnown RBP16.59■□□□□ 0.25
SHH-201ENST00000297261 AMACRQ9UHK6 382 aa16.59■□□□□ 0.25
SHH-201ENST00000297261 AFPP02771 609 aaKnown RBP16.59■□□□□ 0.25
SHH-201ENST00000297261 MYCLP12524 364 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms