RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 EFCAB8A8MWE9 144 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 ZNF185O15231 689 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 RPL13P26373 211 aaKnown RBP12.61□□□□□ -0.39
CUX1-202ENST00000292538 MAGEA1P43355 309 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 MEA1Q16626 185 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 XKR9Q5GH70 373 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 HS2ST1Q7LGA3 356 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 CDC23Q9UJX2 597 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 STK24Q9Y6E0 443 aa12.61□□□□□ -0.39
CUX1-202ENST00000292538 ASTN1O14525 1302 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 ADM5C9JUS6 153 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 EXOC3O60645 756 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 PLA2G6O60733 806 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 ECM2O94769 699 aaPredicted RBP12.6□□□□□ -0.39
CUX1-202ENST00000292538 MATR3P43243 847 aaKnown RBP eCLIP12.6□□□□□ -0.395e-7■■■■□ 22.9
CUX1-202ENST00000292538 CLCN6P51797 869 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 MRPS25P82663 173 aaKnown RBP12.6□□□□□ -0.39
CUX1-202ENST00000292538 KLHL30Q0D2K2 578 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 EXOC3L4Q17RC7 722 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 WDR78Q5VTH9 848 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 MOB2Q70IA6 237 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 FAM186BQ8IYM0 893 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 PDCD2LQ9BRP1 358 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 PAGR1Q9BTK6 254 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 PXMP2Q9NR77 195 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 TYW1Q9NV66 732 aaKnown RBP12.6□□□□□ -0.39
CUX1-202ENST00000292538 MYO6Q9UM54 1294 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 TGFB1I1O43294 461 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 NOL4O94818 638 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 AFPP02771 609 aaKnown RBP12.6□□□□□ -0.39
CUX1-202ENST00000292538 P4HBP07237 508 aaKnown RBP12.6□□□□□ -0.39
CUX1-202ENST00000292538 FECHP22830 423 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 YWHABP31946 246 aaKnown RBP12.6□□□□□ -0.39
CUX1-202ENST00000292538 PEX3P56589 373 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 TMEM132BQ14DG7 1078 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 PDXDC1Q6P996 788 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 NLRX1Q86UT6 975 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 BAP1Q92560 729 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 GOLGA1Q92805 767 aa12.6□□□□□ -0.39
CUX1-202ENST00000292538 SECISBP2LQ93073 1101 aaKnown RBP12.6□□□□□ -0.39
CUX1-202ENST00000292538 GOLGA8IPA6NC78 632 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 GOLGA8JA6NMD2 632 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 PDXKO00764 312 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 NR3C2P08235 984 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 QARSP47897 775 aaKnown RBP12.59□□□□□ -0.39
CUX1-202ENST00000292538 SLC9C1Q4G0N8 1177 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 ZNF720Q7Z2F6 126 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 CCDC170Q8IYT3 715 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 RIT2Q99578 217 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 RNF181Q9P0P0 153 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 GCNT4Q9P109 453 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 A0A1W2PQJ5 194 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 EIF3CLB5ME19 914 aaKnown RBP12.59□□□□□ -0.39
CUX1-202ENST00000292538 BACH1O14867 736 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 SLC16A4O15374 487 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 DHX15O43143 795 aaKnown RBP12.59□□□□□ -0.39
CUX1-202ENST00000292538 CLSTN1O94985 981 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 RNASE9P60153 205 aaKnown RBP12.59□□□□□ -0.39
CUX1-202ENST00000292538 EDRF1Q3B7T1 1238 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 PCNX4Q63HM2 1172 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 GADL1Q6ZQY3 521 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 APOBEC3FQ8IUX4 373 aaKnown RBP12.59□□□□□ -0.39
CUX1-202ENST00000292538 KLRG1Q96E93 195 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 EIF3CQ99613 913 aaKnown RBP12.59□□□□□ -0.39
CUX1-202ENST00000292538 PARD6BQ9BYG5 372 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 SEPT11Q9NVA2 429 aaKnown RBP12.59□□□□□ -0.39
CUX1-202ENST00000292538 FRMD4BQ9Y2L6 1034 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 FHOD1Q9Y613 1164 aa12.59□□□□□ -0.39
CUX1-202ENST00000292538 TMCO5BA8MYB1 307 aa12.58□□□□□ -0.39
CUX1-202ENST00000292538 GAP43P17677 238 aa12.58□□□□□ -0.39
CUX1-202ENST00000292538 TMCO3Q6UWJ1 677 aa12.58□□□□□ -0.39
CUX1-202ENST00000292538 SEPT14Q6ZU15 432 aa12.58□□□□□ -0.39
CUX1-202ENST00000292538 ANKRD35Q8N283 1001 aa12.58□□□□□ -0.39
CUX1-202ENST00000292538 ELMO3Q96BJ8 720 aa12.58□□□□□ -0.39
CUX1-202ENST00000292538 GBP3Q9H0R5 595 aa12.58□□□□□ -0.39
CUX1-202ENST00000292538 PLEKHA4Q9H4M7 779 aa12.58□□□□□ -0.39
CUX1-202ENST00000292538 ARGLU1Q9NWB6 273 aaPredicted RBP12.58□□□□□ -0.39
CUX1-202ENST00000292538 TRAF3IP3Q9Y228 551 aa12.58□□□□□ -0.39
CUX1-202ENST00000292538 USP20Q9Y2K6 914 aa12.58□□□□□ -0.39
CUX1-202ENST00000292538 CAPN6Q9Y6Q1 641 aa12.58□□□□□ -0.39
CUX1-202ENST00000292538 CENPFP49454 3210 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 CTAGE15A4D2H0 777 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 NCK2O43639 380 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 PPP1R12BO60237 982 aaPredicted RBP12.58□□□□□ -0.4
CUX1-202ENST00000292538 TLR2O60603 784 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 ZMYND10O75800 440 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 CCNE2O96020 404 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 CTAGE8P0CG41 777 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 VAV2P52735 878 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 TMEM132AQ24JP5 1023 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 SWSAP1Q6NVH7 229 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 PPP4R3CPQ6ZMV5 832 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 EPM2AIP1Q7L775 607 aaPredicted RBP12.58□□□□□ -0.4
CUX1-202ENST00000292538 SRGAP1Q7Z6B7 1085 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 CTAGE6Q86UF2 777 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 CTAGE4Q8IX94 777 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 OTUD5Q96G74 571 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 FHDC1Q9C0D6 1143 aaPredicted RBP12.58□□□□□ -0.4
CUX1-202ENST00000292538 SMARCAL1Q9NZC9 954 aa12.58□□□□□ -0.4
CUX1-202ENST00000292538 CEP72Q9P209 647 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms