RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FAM160B2Q86V87 743 aa22.01■■□□□ 1.11
VPS53-201ENST00000291074 RBM46Q8TBY0 533 aaKnown RBP22.01■■□□□ 1.11
VPS53-201ENST00000291074 SPAG5Q96R06 1193 aa22.01■■□□□ 1.11
VPS53-201ENST00000291074 COL20A1Q9P218 1284 aa22.01■■□□□ 1.11
VPS53-201ENST00000291074 IRF2BP2Q7Z5L9 587 aa22■■□□□ 1.11
VPS53-201ENST00000291074 HDAC7Q8WUI4 952 aa22■■□□□ 1.11
VPS53-201ENST00000291074 ZNF341Q9BYN7 854 aa22■■□□□ 1.11
VPS53-201ENST00000291074 PARVGQ9HBI0 331 aa22■■□□□ 1.11
VPS53-201ENST00000291074 PGAP2Q9UHJ9 254 aa22■■□□□ 1.11
VPS53-201ENST00000291074 FEM1BQ9UK73 627 aa22■■□□□ 1.11
VPS53-201ENST00000291074 FRMPD4Q14CM0 1322 aa22■■□□□ 1.11
VPS53-201ENST00000291074 TARSL2A2RTX5 802 aaKnown RBP22■■□□□ 1.11
VPS53-201ENST00000291074 TBC1D12O60347 775 aa22■■□□□ 1.11
VPS53-201ENST00000291074 PALMO75781 387 aa22■■□□□ 1.11
VPS53-201ENST00000291074 FTCDO95954 541 aa22■■□□□ 1.11
VPS53-201ENST00000291074 PRLRP16471 622 aa22■■□□□ 1.11
VPS53-201ENST00000291074 TCP1P17987 556 aaKnown RBP22■■□□□ 1.11
VPS53-201ENST00000291074 RPL13P26373 211 aaKnown RBP22■■□□□ 1.11
VPS53-201ENST00000291074 TNNT3P45378 269 aaPredicted RBP22■■□□□ 1.11
VPS53-201ENST00000291074 KIAA0753Q2KHM9 967 aa22■■□□□ 1.11
VPS53-201ENST00000291074 ZNF571Q7Z3V5 609 aaPredicted RBP22■■□□□ 1.11
VPS53-201ENST00000291074 SPATA4Q8NEY3 305 aa22■■□□□ 1.11
VPS53-201ENST00000291074 IL31RAQ8NI17 732 aa22■■□□□ 1.11
VPS53-201ENST00000291074 MS4A14Q96JA4 679 aa22■■□□□ 1.11
VPS53-201ENST00000291074 FIZ1Q96SL8 496 aa22■■□□□ 1.11
VPS53-201ENST00000291074 PLCB1Q9NQ66 1216 aa22■■□□□ 1.11
VPS53-201ENST00000291074 CCPG1Q9ULG6 757 aa22■■□□□ 1.11
VPS53-201ENST00000291074 IPO5O00410 1097 aaKnown RBP21.99■■□□□ 1.11
VPS53-201ENST00000291074 NFIBO00712 420 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 WNT10BO00744 389 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 RNF10Q8N5U6 811 aaKnown RBP21.99■■□□□ 1.11
VPS53-201ENST00000291074 LXNQ9BS40 222 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 EHMT1Q9H9B1 1298 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 SIX2Q9NPC8 291 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.99■■□□□ 1.11
VPS53-201ENST00000291074 GCNT4Q9P109 453 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 ZNRF3Q9ULT6 936 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 ZNF536O15090 1300 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 SLC16A3O15427 465 aaKnown RBP21.99■■□□□ 1.11
VPS53-201ENST00000291074 ITGB5P18084 799 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 CYP2C19P33261 490 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 CXCL9Q07325 125 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 NAB2Q15742 525 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 NIM1KQ8IY84 436 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 LRRC1Q9BTT6 524 aa21.99■■□□□ 1.11
VPS53-201ENST00000291074 CCDC181Q5TID7 509 aa21.98■■□□□ 1.11
VPS53-201ENST00000291074 FKBP1CQ5VVH2 108 aa21.98■■□□□ 1.11
VPS53-201ENST00000291074 IQCEQ6IPM2 695 aa21.98■■□□□ 1.11
VPS53-201ENST00000291074 FAM83AQ86UY5 434 aa21.98■■□□□ 1.11
VPS53-201ENST00000291074 TEKT3Q9BXF9 490 aa21.98■■□□□ 1.11
VPS53-201ENST00000291074 METTL14Q9HCE5 456 aaKnown RBP21.98■■□□□ 1.11
VPS53-201ENST00000291074 PACSIN2Q9UNF0 486 aaPredicted RBP21.98■■□□□ 1.11
VPS53-201ENST00000291074 PLA2G6O60733 806 aa21.98■■□□□ 1.11
VPS53-201ENST00000291074 EIF3JO75822 258 aaKnown RBP21.98■■□□□ 1.11
VPS53-201ENST00000291074 GRIPAP1Q4V328 841 aa21.98■■□□□ 1.11
VPS53-201ENST00000291074 TXLNBQ8N3L3 684 aa21.98■■□□□ 1.11
VPS53-201ENST00000291074 BORCS6Q96GS4 357 aa21.98■■□□□ 1.11
VPS53-201ENST00000291074 WDR11Q9BZH6 1224 aa21.98■■□□□ 1.11
VPS53-201ENST00000291074 FER1L6Q2WGJ9 1857 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 EIF3DO15371 548 aaKnown RBP eCLIP21.97■■□□□ 1.11
VPS53-201ENST00000291074 ASNSP08243 561 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 PTGER2P43116 358 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 GBP6Q6ZN66 633 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 ZNF572Q7Z3I7 529 aaPredicted RBP21.97■■□□□ 1.11
VPS53-201ENST00000291074 FAM178BQ8IXR5 827 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 MMGT1Q8N4V1 131 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 CCDC102AQ96A19 550 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 HOOK2Q96ED9 719 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 NACC1Q96RE7 527 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 VPS18Q9P253 973 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 DMGDHQ9UI17 866 aaKnown RBP21.97■■□□□ 1.11
VPS53-201ENST00000291074 SLC7A5Q01650 507 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 B3GNT9Q6UX72 402 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 MAEAQ7L5Y9 396 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 FAM186BQ8IYM0 893 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 CPXCR1Q8N123 301 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 MXRA8Q9BRK3 442 aa21.97■■□□□ 1.11
VPS53-201ENST00000291074 LUC7LQ9NQ29 371 aaKnown RBP21.97■■□□□ 1.11
VPS53-201ENST00000291074 SETQ01105 290 aaPredicted RBP21.96■■□□□ 1.11
VPS53-201ENST00000291074 GPS2Q13227 327 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 PLS1Q14651 629 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 ODR4Q5SWX8 454 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 HOMER2Q9NSB8 354 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 PHACTR2O75167 634 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 EGFRP00533 1210 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 ICAM1P05362 532 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 MCM3P25205 808 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 CYP2J2P51589 502 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 HSD17B4P51659 736 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 ZNF720Q7Z2F6 126 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 KCTD17Q8N5Z5 321 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 MTMR14Q8NCE2 650 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 AGBL3Q8NEM8 1001 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 FAN1Q9Y2M0 1017 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 UTRNP46939 3433 aa21.96■■□□□ 1.11
VPS53-201ENST00000291074 ZNF131P52739 623 aa21.95■■□□□ 1.1
VPS53-201ENST00000291074 CCNI2Q6ZMN8 369 aaPredicted RBP21.95■■□□□ 1.1
VPS53-201ENST00000291074 ZBED3Q96IU2 234 aaPredicted RBP21.95■■□□□ 1.1
VPS53-201ENST00000291074 RBM12Q9NTZ6 932 aaKnown RBP21.95■■□□□ 1.1
VPS53-201ENST00000291074 PSMC2P35998 433 aaKnown RBP21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms