RNA–Protein interactions for RNA: ENST00000289547.8

NPC1L1-201, Transcript of NPC1 like intracellular cholesterol transporter 1, humanhuman

TSL 1 (best) BASIC

Gene NPC1L1, Length 5,048 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1-201ENST00000289547 PGBD1Q96JS3 809 aa12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 EHD4Q9H223 541 aa12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 FOXP1Q9H334 677 aaPredicted RBP12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 CXCL11O14625 94 aa12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 TLR3O15455 904 aaKnown RBP12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 NECTIN1Q15223 517 aa12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 NAA35Q5VZE5 725 aa12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 TMTC3Q6ZXV5 915 aa12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 DYMQ7RTS9 669 aa12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 GSPT2Q8IYD1 628 aaKnown RBP12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 PANX2Q96RD6 677 aa12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 ANO3Q9BYT9 981 aa12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 POLR3EQ9NVU0 708 aa12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 SEPT9Q9UHD8 586 aaPredicted RBP12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 COL16A1Q07092 1604 aaPredicted RBP12.32□□□□□ -0.44
NPC1L1-201ENST00000289547 EIF4E1BA6NMX2 242 aaKnown RBP12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 SKIP12755 728 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 IRX1P78414 480 aaPredicted RBP12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 NUF2Q9BZD4 464 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 HMGB1P1B2RPK0 211 aaPredicted RBP12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 BIRC3Q13489 604 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 PARP9Q8IXQ6 854 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 CHST13Q8NET6 341 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 ENOX1Q8TC92 643 aaKnown RBP12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 RILPQ96NA2 401 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 CSRNP2Q9H175 543 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 AKT3Q9Y243 479 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 PFASO15067 1338 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 RGS2P41220 211 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 JAK3P52333 1124 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 TXNRD3Q86VQ6 643 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 CCDC13Q8IYE1 715 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 ENAHQ8N8S7 591 aaPredicted RBP12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 OPTNQ96CV9 577 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 NDUFA10O95299 355 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 HERC4Q5GLZ8 1057 aaPredicted RBP12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 REM2Q8IYK8 340 aaPredicted RBP12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 SMYD4Q8IYR2 804 aaPredicted RBP12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 TXNDC16Q9P2K2 825 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 ATP8A1Q9Y2Q0 1164 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 PCDHB13Q9Y5F0 798 aa12.31□□□□□ -0.44
NPC1L1-201ENST00000289547 ENO4A6NNW6 628 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 DMP1Q13316 513 aaPredicted RBP12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 E4F1Q66K89 784 aaPredicted RBP12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 ZKSCAN4Q969J2 545 aaPredicted RBP12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 THOC1Q96FV9 657 aaKnown RBP12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 WDR24Q96S15 920 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 YY1AP1Q9H869 796 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 NFU1Q9UMS0 254 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 GAS8O95995 478 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 TECP42680 631 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 SNAP25P60880 206 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 NBPF12Q5TAG4 269 aaPredicted RBP12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 RNF169Q8NCN4 708 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 MORC4Q8TE76 937 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 CREB3O43889 395 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 TBC1D8O95759 1140 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 VSNL1P62760 191 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 SATB1Q01826 763 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 PPP2R5EQ16537 467 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 TBCKQ8TEA7 893 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 MTIF3Q9H2K0 278 aaKnown RBP12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 MRPL44Q9H9J2 332 aaKnown RBP12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 STRCQ7RTU9 1775 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 ADM5C9JUS6 153 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 I3L4J1 428 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 MAPK4P31152 587 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 CORO7P57737 925 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 CYP27A1Q02318 531 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 DHX9Q08211 1270 aaKnown RBP12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 TMCO4Q5TGY1 634 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 GRAMD1CQ8IYS0 662 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 KAZALD1Q96I82 304 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 UIMC1Q96RL1 719 aa12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 ELAC2Q9BQ52 826 aaKnown RBP12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 RTFDC1Q9BY42 306 aaPredicted RBP12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 TSPYL2Q9H2G4 693 aaPredicted RBP12.3□□□□□ -0.44
NPC1L1-201ENST00000289547 SRGAP2O75044 1071 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 HOXA13P31271 388 aaPredicted RBP12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 TMED1Q13445 227 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 HSP90AA5PQ58FG0 334 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 ARMCX5Q6P1M9 558 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 VPS37BQ9H9H4 285 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 TBC1D22BQ9NU19 505 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 MAN1B1Q9UKM7 699 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 NDUFB10O96000 172 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 VPS41P49754 854 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 NOGQ13253 232 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 NELFCDQ8IXH7 590 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 U2AF1L4Q8WU68 220 aaKnown RBP12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 CNOT10Q9H9A5 744 aaKnown RBP12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 TMEM88BA6NKF7 163 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 MEFVO15553 781 aaPredicted RBP12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 XPOTO43592 962 aaKnown RBP12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 ABCB4P21439 1286 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 LONP1P36776 959 aaKnown RBP12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 PLA2G4AP47712 749 aa12.29□□□□□ -0.44
NPC1L1-201ENST00000289547 BACE1P56817 501 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms