RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 AGPSO00116 658 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 ONECUT3O60422 494 aaPredicted RBP18.19■□□□□ 0.5
VPS54-201ENST00000272322 GOLGA6DP0CG33 693 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 MYCLP12524 364 aaPredicted RBP18.19■□□□□ 0.5
VPS54-201ENST00000272322 EN1Q05925 392 aaPredicted RBP18.19■□□□□ 0.5
VPS54-201ENST00000272322 GOLGA6AQ9NYA3 693 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 STIM2Q9P246 746 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 GRID2IPA4D2P6 1211 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 ALAS1P13196 640 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 ORC2Q13416 577 aaPredicted RBP18.19■□□□□ 0.5
VPS54-201ENST00000272322 FAM186BQ8IYM0 893 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 FAM71BQ8TC56 605 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 GCOM1H8Y6P7 765 aaPredicted RBP18.18■□□□□ 0.5
VPS54-201ENST00000272322 POLR2MP0CAP2 368 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 ACTN2P35609 894 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 MKL1Q969V6 931 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 CEP63Q96MT8 703 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 CCDC43Q96MW1 224 aaKnown RBP18.18■□□□□ 0.5
VPS54-201ENST00000272322 BCCIPQ9P287 314 aaKnown RBP eCLIP18.18■□□□□ 0.5
VPS54-201ENST00000272322 USP20Q9Y2K6 914 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 EXOC3O60645 756 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 SREBF1P36956 1147 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 CDK17Q00537 523 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 TATDN1Q6P1N9 297 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 DAAM2Q86T65 1068 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 OR2W6PQ8NHA6 318 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 GANQ9H2C0 597 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 GPRC5CQ9NQ84 441 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 ASTN1O14525 1302 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 ZNF211Q13398 564 aaPredicted RBP18.18■□□□□ 0.5
VPS54-201ENST00000272322 RPS6KA1Q15418 735 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 NBPF9Q3BBW0 867 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 GRIPAP1Q4V328 841 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 PHLDB2Q86SQ0 1253 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 VAV3Q9UKW4 847 aa18.18■□□□□ 0.5
VPS54-201ENST00000272322 TGFB1I1O43294 461 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 CALUO43852 315 aaPredicted RBP18.17■□□□□ 0.5
VPS54-201ENST00000272322 ITGA4P13612 1032 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 EIF2AK2P19525 551 aaKnown RBP18.17■□□□□ 0.5
VPS54-201ENST00000272322 SOX10P56693 466 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 AP3B2Q13367 1082 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 CBWD6Q4V339 395 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 CBWD3Q5JTY5 395 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 CBWD5Q5RIA9 395 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 SLC35C1Q96A29 364 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 WDR11Q9BZH6 1224 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 NFIBO00712 420 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 GBP6Q6ZN66 633 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 OTOP1Q7RTM1 612 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 MAATS1Q7Z4T9 603 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 IRF2BP2Q7Z5L9 587 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 PALB2Q86YC2 1186 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 IL31RAQ8NI17 732 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 KIFC3Q9BVG8 833 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 IDI2Q9BXS1 227 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 ARHGEF10LQ9HCE6 1279 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 FAM184BQ9ULE4 1060 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 COL24A1Q17RW2 1714 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 CALCAP01258 141 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 LXNQ9BS40 222 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 CELF4Q9BZC1 486 aaKnown RBP18.17■□□□□ 0.5
VPS54-201ENST00000272322 DPH5Q9H2P9 285 aa18.17■□□□□ 0.5
VPS54-201ENST00000272322 SSU72P8A0A1W2PR75 194 aa18.16■□□□□ 0.5
VPS54-201ENST00000272322 GNA14O95837 355 aa18.16■□□□□ 0.5
VPS54-201ENST00000272322 HPDP32754 393 aaPredicted RBP18.16■□□□□ 0.5
VPS54-201ENST00000272322 DLG4P78352 724 aa18.16■□□□□ 0.5
VPS54-201ENST00000272322 NAB2Q15742 525 aa18.16■□□□□ 0.5
VPS54-201ENST00000272322 CCDC127Q96BQ5 260 aa18.16■□□□□ 0.5
VPS54-201ENST00000272322 UNC45AQ9H3U1 944 aa18.16■□□□□ 0.5
VPS54-201ENST00000272322 LUC7LQ9NQ29 371 aaKnown RBP18.16■□□□□ 0.5
VPS54-201ENST00000272322 NAGPAQ9UK23 515 aa18.16■□□□□ 0.5
VPS54-201ENST00000272322 RBAK-RBAKDNI3L0D1 243 aa18.16■□□□□ 0.5
VPS54-201ENST00000272322 RAD51CO43502 376 aa18.16■□□□□ 0.5
VPS54-201ENST00000272322 LDHDQ86WU2 507 aa18.16■□□□□ 0.5
VPS54-201ENST00000272322 RAVER2Q9HCJ3 691 aaKnown RBP18.16■□□□□ 0.5
VPS54-201ENST00000272322 TAS2R14Q9NYV8 317 aa18.16■□□□□ 0.5
VPS54-201ENST00000272322 NSMFQ6X4W1 530 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 PEX26Q7Z412 305 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 ZNF341Q9BYN7 854 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 PARVGQ9HBI0 331 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 CDK5RAP2Q96SN8 1893 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 ARHGEF35A5YM69 484 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 IPO5O00410 1097 aaKnown RBP18.15■□□□□ 0.5
VPS54-201ENST00000272322 EVI5O60447 810 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 INPP5BP32019 993 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 GCLMP48507 274 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 COBLL1Q53SF7 1204 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 AADACL2Q6P093 401 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 RPGRIP1Q96KN7 1286 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 CCPG1Q9ULG6 757 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 RPL13P26373 211 aaKnown RBP18.15■□□□□ 0.5
VPS54-201ENST00000272322 DRAP1Q14919 205 aaPredicted RBP18.15■□□□□ 0.5
VPS54-201ENST00000272322 CEP55Q53EZ4 464 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 HYIQ5T013 277 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 HS2ST1Q7LGA3 356 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 FAM76AQ8TAV0 307 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 AMACRQ9UHK6 382 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 SERPINA10Q9UK55 444 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 DNAJC12Q9UKB3 198 aa18.15■□□□□ 0.5
VPS54-201ENST00000272322 K7ENM7 598 aa18.14■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms