RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 PGM5Q15124 567 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 NFIL3Q16649 462 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 SLC9C1Q4G0N8 1177 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 ANGEL2Q5VTE6 544 aaKnown RBP14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 FAM178BQ8IXR5 827 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 PURBQ96QR8 312 aaKnown RBP14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 TAAR1Q96RJ0 339 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 SGIP1Q9BQI5 828 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 TBC1D22BQ9NU19 505 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 OGFRQ9NZT2 677 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 PUF60Q9UHX1 559 aaKnown RBP14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 DDX41Q9UJV9 622 aaKnown RBP14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 TFR2Q9UP52 801 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 SAMM50Q9Y512 469 aa14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 COL11A1P12107 1806 aaPredicted RBP14.21□□□□□ -0.13
SPTLC1-201ENST00000262554 ZNF263O14978 683 aa14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 AKAP3O75969 853 aa14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 SERPING1P05155 500 aa14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 CLCN6P51797 869 aa14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 AMPD2Q01433 879 aa14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 TDRD12Q587J7 1177 aaKnown RBP14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 ODR4Q5SWX8 454 aa14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 ZNF720Q7Z2F6 126 aa14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 SECISBP2LQ93073 1101 aaKnown RBP14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 ZKSCAN4Q969J2 545 aaPredicted RBP14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 RMDN3Q96TC7 470 aa14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 BCAS3Q9H6U6 928 aa14.21□□□□□ -0.14
SPTLC1-201ENST00000262554 ZMYM2Q9UBW7 1377 aa14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 CLIC2O15247 247 aa14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 TGFB1I1O43294 461 aa14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 PPP1R12BO60237 982 aaPredicted RBP14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 KCNA1Q09470 495 aa14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 ITGB3BPQ13352 177 aaPredicted RBP14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 DCAF17Q5H9S7 520 aaPredicted RBP14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 ARHGEF16Q5VV41 709 aa14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 PADI6Q6TGC4 694 aa14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 NSMFQ6X4W1 530 aa14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 ATG4CQ96DT6 458 aa14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 PLCB1Q9NQ66 1216 aa14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 DBR1Q9UK59 544 aaKnown RBP14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 PCDHB13Q9Y5F0 798 aa14.2□□□□□ -0.14
SPTLC1-201ENST00000262554 ANO9A1A5B4 782 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 MACROD2A1Z1Q3 448 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 CTAGE15A4D2H0 777 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 C19orf81C9J6K1 198 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 HIP1RO75146 1068 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 CTAGE8P0CG41 777 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 MYCLP12524 364 aaPredicted RBP14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 PSMC2P35998 433 aaKnown RBP14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 QARSP47897 775 aaKnown RBP14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 GLIPR1L2Q4G1C9 344 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 ZC2HC1CQ53FD0 456 aaPredicted RBP14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 TCERG1LQ5VWI1 586 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 HGSNATQ68CP4 663 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 TMCO3Q6UWJ1 677 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 HS2ST1Q7LGA3 356 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 TRAPPC11Q7Z392 1133 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 CTAGE6Q86UF2 777 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 CTAGE4Q8IX94 777 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 C12orf42Q96LP6 360 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 FIZ1Q96SL8 496 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 GANQ9H2C0 597 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 LUC7LQ9NQ29 371 aaKnown RBP14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 PXMP2Q9NR77 195 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 RNF146Q9NTX7 359 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 TCEAL9Q9UHQ7 104 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 RLFQ13129 1914 aa14.19□□□□□ -0.14
SPTLC1-201ENST00000262554 POTEB2H3BUK9 544 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 ENC1O14682 589 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 TACC1O75410 805 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 MAGEA1P43355 309 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 CASP4P49662 377 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 OAZ1P54368 228 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 RAPGEF1Q13905 1077 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 EXOC3L4Q17RC7 722 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 ASTE1Q2TB18 679 aaPredicted RBP14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 PRAMEF18Q5VWM3 479 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 PAPD7Q5XG87 772 aaKnown RBP14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 XRRA1Q6P2D8 792 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 TRIM58Q8NG06 486 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 GOLGA5Q8TBA6 731 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 PDCD2LQ9BRP1 358 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 AIPL1Q9NZN9 384 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 PPP2R3BQ9Y5P8 575 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 SAR1BQ9Y6B6 198 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 DUSP10Q9Y6W6 482 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 ZHX2Q9Y6X8 837 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 DICER1Q9UPY3 1922 aaKnown RBP14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 RBAK-RBAKDNI3L0D1 243 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 LYPLA2O95372 231 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 ATP1A1P05023 1023 aaKnown RBP14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 JAK3P52333 1124 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 HMGCS2P54868 508 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 CBX1P83916 185 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 ASIC2Q16515 512 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 GBP6Q6ZN66 633 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 FAM186BQ8IYM0 893 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 SLC35C1Q96A29 364 aa14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 CCDC43Q96MW1 224 aaKnown RBP14.18□□□□□ -0.14
SPTLC1-201ENST00000262554 MKNK1Q9BUB5 465 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms