RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ERVK-9P63128 1117 aa23.29■■□□□ 1.32
TRIM28-201ENST00000253024 SYDE2Q5VT97 1194 aa23.29■■□□□ 1.32
TRIM28-201ENST00000253024 ZNF746Q6NUN9 644 aaPredicted RBP23.29■■□□□ 1.32
TRIM28-201ENST00000253024 PEX26Q7Z412 305 aa23.29■■□□□ 1.32
TRIM28-201ENST00000253024 UHMK1Q8TAS1 419 aaKnown RBP23.29■■□□□ 1.32
TRIM28-201ENST00000253024 LRRC4CQ9HCJ2 640 aa23.29■■□□□ 1.32
TRIM28-201ENST00000253024 LUC7LQ9NQ29 371 aaKnown RBP23.29■■□□□ 1.32
TRIM28-201ENST00000253024 PI4KBQ9UBF8 816 aa23.29■■□□□ 1.32
TRIM28-201ENST00000253024 SMIM23A6NLE4 172 aa23.28■■□□□ 1.32
TRIM28-201ENST00000253024 PPFIA4O75335 1185 aa23.28■■□□□ 1.32
TRIM28-201ENST00000253024 METTL13Q8N6R0 699 aa23.28■■□□□ 1.32
TRIM28-201ENST00000253024 ERMNQ8TAM6 284 aa23.28■■□□□ 1.32
TRIM28-201ENST00000253024 PRMT6Q96LA8 375 aaPredicted RBP23.28■■□□□ 1.32
TRIM28-201ENST00000253024 RNPC3Q96LT9 517 aaKnown RBP23.28■■□□□ 1.32
TRIM28-201ENST00000253024 INPP4AQ96PE3 977 aaPredicted RBP23.28■■□□□ 1.32
TRIM28-201ENST00000253024 TAS2R14Q9NYV8 317 aa23.28■■□□□ 1.32
TRIM28-201ENST00000253024 WRAP73Q9P2S5 460 aaPredicted RBP23.28■■□□□ 1.32
TRIM28-201ENST00000253024 COL24A1Q17RW2 1714 aa23.28■■□□□ 1.32
TRIM28-201ENST00000253024 EPB41P11171 864 aaKnown RBP23.28■■□□□ 1.32
TRIM28-201ENST00000253024 ORC2Q13416 577 aaPredicted RBP23.28■■□□□ 1.32
TRIM28-201ENST00000253024 COL23A1Q86Y22 540 aaPredicted RBP23.28■■□□□ 1.32
TRIM28-201ENST00000253024 SLFN12Q8IYM2 578 aa23.28■■□□□ 1.32
TRIM28-201ENST00000253024 UBLCP1Q8WVY7 318 aaPredicted RBP23.28■■□□□ 1.32
TRIM28-201ENST00000253024 WDR18Q9BV38 432 aa23.28■■□□□ 1.32
TRIM28-201ENST00000253024 HOMER2Q9NSB8 354 aa23.28■■□□□ 1.32
TRIM28-201ENST00000253024 BMP3P12645 472 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 SEMA3FQ13275 785 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 DGKZQ13574 1117 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 SLC35C1Q96A29 364 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 PLAAQ9Y263 795 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 KRIT1O00522 736 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 RPA1P27694 616 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 USP11P51784 963 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 CBWD6Q4V339 395 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 CBWD3Q5JTY5 395 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 CBWD5Q5RIA9 395 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 PPP1R18Q6NYC8 613 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 RNF10Q8N5U6 811 aaKnown RBP23.27■■□□□ 1.32
TRIM28-201ENST00000253024 SYT2Q8N9I0 419 aaPredicted RBP23.27■■□□□ 1.32
TRIM28-201ENST00000253024 USP38Q8NB14 1042 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 ZSWIM2Q8NEG5 633 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 TRIM51Q9BSJ1 452 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 PRR12Q9ULL5 1215 aa23.27■■□□□ 1.32
TRIM28-201ENST00000253024 DDX3XO00571 662 aaKnown RBP eCLIP23.26■■□□□ 1.313e-21■■□□□ 12.4
TRIM28-201ENST00000253024 NDUFAB1O14561 156 aa23.26■■□□□ 1.31
TRIM28-201ENST00000253024 DAPK3O43293 454 aa23.26■■□□□ 1.31
TRIM28-201ENST00000253024 ECE2O60344 883 aa23.26■■□□□ 1.31
TRIM28-201ENST00000253024 KIF4AO95239 1232 aa23.26■■□□□ 1.31
TRIM28-201ENST00000253024 LRCH2Q5VUJ6 765 aa23.26■■□□□ 1.31
TRIM28-201ENST00000253024 RINT1Q6NUQ1 792 aa23.26■■□□□ 1.31
TRIM28-201ENST00000253024 HOOK2Q96ED9 719 aa23.26■■□□□ 1.31
TRIM28-201ENST00000253024 PPANQ9NQ55 473 aaKnown RBP23.26■■□□□ 1.31
TRIM28-201ENST00000253024 NOC2LQ9Y3T9 749 aaKnown RBP23.26■■□□□ 1.31
TRIM28-201ENST00000253024 IGSF9BQ9UPX0 1349 aa23.26■■□□□ 1.31
TRIM28-201ENST00000253024 EVI5O60447 810 aa23.26■■□□□ 1.31
TRIM28-201ENST00000253024 GNA14O95837 355 aa23.26■■□□□ 1.31
TRIM28-201ENST00000253024 PRLRP16471 622 aa23.26■■□□□ 1.31
TRIM28-201ENST00000253024 TTI1O43156 1089 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 TGFB1I1O43294 461 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 SORBS3O60504 671 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 GBP6Q6ZN66 633 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 PACS2Q86VP3 889 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 FAM186BQ8IYM0 893 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 GLIS2Q9BZE0 524 aaPredicted RBP23.25■■□□□ 1.31
TRIM28-201ENST00000253024 VEZTQ9HBM0 779 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 AIPL1Q9NZN9 384 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 TMOD4Q9NZQ9 345 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 PLIN4Q96Q06 1357 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 SART1O43290 800 aaKnown RBP23.25■■□□□ 1.31
TRIM28-201ENST00000253024 PAK2Q13177 524 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 EMBQ6PCB8 327 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 SYCP3Q8IZU3 236 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 CALUO43852 315 aaPredicted RBP23.25■■□□□ 1.31
TRIM28-201ENST00000253024 OPA1O60313 960 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 GALCP54803 685 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 PPFIA1Q13136 1202 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 EPHA7Q15375 998 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 CHADLQ6NUI6 762 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 PCDHGC5Q9Y5F6 944 aa23.25■■□□□ 1.31
TRIM28-201ENST00000253024 ABCB11O95342 1321 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 RBAK-RBAKDNI3L0D1 243 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 ARP10275 920 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 ODR4Q5SWX8 454 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 RBM26Q5T8P6 1007 aaKnown RBP23.24■■□□□ 1.31
TRIM28-201ENST00000253024 IQCDQ96DY2 449 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 GOPCQ9HD26 462 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 GRIN2DO15399 1336 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 ATMINO43313 823 aaPredicted RBP23.24■■□□□ 1.31
TRIM28-201ENST00000253024 CALCAP01258 141 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 HYIQ5T013 277 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 PIK3R5Q8WYR1 880 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 CCDC17Q96LX7 622 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 ZBTB12Q9Y330 459 aaPredicted RBP23.24■■□□□ 1.31
TRIM28-201ENST00000253024 MYH4Q9Y623 1939 aa23.24■■□□□ 1.31
TRIM28-201ENST00000253024 RGL2O15211 777 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 ADRA2BP18089 450 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 TMOD1P28289 359 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 DLG4P78352 724 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 DRAP1Q14919 205 aaPredicted RBP23.23■■□□□ 1.31
TRIM28-201ENST00000253024 ODF2Q5BJF6 829 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms