RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 SLC40A1Q9NP59 571 aa8.09□□□□□ -1.11
RIF1-201ENST00000243326 BCAP29Q9UHQ4 241 aa8.09□□□□□ -1.11
RIF1-201ENST00000243326 STRIP2Q9ULQ0 834 aa8.09□□□□□ -1.11
RIF1-201ENST00000243326 SPATA31E1Q6ZUB1 1445 aa8.09□□□□□ -1.11
RIF1-201ENST00000243326 ATP8B1O43520 1251 aa8.09□□□□□ -1.12
RIF1-201ENST00000243326 NSFP46459 744 aaKnown RBP8.09□□□□□ -1.12
RIF1-201ENST00000243326 ZBED6P86452 979 aa8.09□□□□□ -1.12
RIF1-201ENST00000243326 TRAPPC3LQ5T215 181 aa8.09□□□□□ -1.12
RIF1-201ENST00000243326 C1orf146Q5VVC0 180 aa8.09□□□□□ -1.12
RIF1-201ENST00000243326 DHTKD1Q96HY7 919 aaPredicted RBP8.09□□□□□ -1.12
RIF1-201ENST00000243326 ANKRD7Q92527 254 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 CARD10Q9BWT7 1032 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 HMGXB3Q12766 1538 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 RSPH3Q86UC2 560 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 CALR3Q96L12 384 aaKnown RBP8.08□□□□□ -1.12
RIF1-201ENST00000243326 PCDHA1Q9Y5I3 950 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 LGSNQ5TDP6 509 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 SFR1Q86XK3 245 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 CATSPER3Q86XQ3 398 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 CCNL1Q9UK58 526 aaPredicted RBP8.08□□□□□ -1.12
RIF1-201ENST00000243326 TNNC2P02585 160 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 KRT80Q6KB66 452 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 DNAAF3Q8N9W5 541 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 CENPKQ9BS16 269 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 MKNK1Q9BUB5 465 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 EMILIN3Q9NT22 766 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 DNAJC12Q9UKB3 198 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 ELF1P32519 619 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 KDSRQ06136 332 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 KIF19Q2TAC6 998 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 TTI1O43156 1089 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 TRIM49P0CI25 452 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 TRIM49CP0CI26 452 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 ALKBH5Q6P6C2 394 aaKnown RBP8.08□□□□□ -1.12
RIF1-201ENST00000243326 SHCBP1LQ9BZQ2 653 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 GTSE1Q9NYZ3 720 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 GYS1P13807 737 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 EML3Q32P44 896 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 NT5C1BQ96P26 610 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 ADA2Q9NZK5 511 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 OVGP1Q12889 678 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 CYFIP2Q96F07 1278 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 VPS11Q9H270 941 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 BRAFP15056 766 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 INPP1P49441 399 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 USP49Q70CQ1 688 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 MAIP1Q8WWC4 291 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 AGPAT5Q9NUQ2 364 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 DUSP10Q9Y6W6 482 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 ABCC12Q96J65 1359 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 ZNF18P17022 549 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 GPS1Q13098 491 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 ANKRD20A4Q4UJ75 823 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 ANKRD20A8PQ5CZ79 823 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 ANKRD20A2Q5SQ80 823 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 ANKRD20A1Q5TYW2 823 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 EPM2AIP1Q7L775 607 aaPredicted RBP8.08□□□□□ -1.12
RIF1-201ENST00000243326 ANKRD35Q8N283 1001 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 IWS1Q96ST2 819 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 KIAA0556O60303 1618 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 PAX7P23759 505 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 ADD2P35612 726 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 CCT8L2Q96SF2 557 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 A6NNZ2 444 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 MYCP01106 439 aaPredicted RBP8.08□□□□□ -1.12
RIF1-201ENST00000243326 PPP1R2P41236 205 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 FXR1P51114 621 aaKnown RBP eCLIP8.08□□□□□ -1.12
RIF1-201ENST00000243326 SCARF1Q14162 830 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 TUBB8Q3ZCM7 444 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 ARHGEF18Q6ZSZ5 1173 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 METTL16Q86W50 562 aaKnown RBP8.08□□□□□ -1.12
RIF1-201ENST00000243326 PITPNM3Q9BZ71 974 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 EHD4Q9H223 541 aa8.08□□□□□ -1.12
RIF1-201ENST00000243326 XPO1O14980 1071 aaKnown RBP8.07□□□□□ -1.12
RIF1-201ENST00000243326 MKRN3Q13064 507 aaKnown RBP8.07□□□□□ -1.12
RIF1-201ENST00000243326 VCX3AQ9NNX9 186 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 MROH5Q6ZUA9 1318 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 POTEFA5A3E0 1075 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 POTEIP0CG38 1075 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 POTEGQ6S5H5 508 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 POTEEQ6S8J3 1075 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 BTBD6Q96KE9 485 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 CHN1P15882 459 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 ATP2B4P23634 1241 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 MAP3K21Q5TCX8 1036 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 KMT5AQ9NQR1 393 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 KDM3AQ9Y4C1 1321 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 IGF2BP3O00425 579 aaKnown RBP eCLIP8.07□□□□□ -1.12
RIF1-201ENST00000243326 PSMC2P35998 433 aaKnown RBP8.07□□□□□ -1.12
RIF1-201ENST00000243326 PPP6R3Q5H9R7 873 aaPredicted RBP8.07□□□□□ -1.12
RIF1-201ENST00000243326 GADL1Q6ZQY3 521 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 KIAA2013Q8IYS2 634 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 ATP6V1G3Q96LB4 118 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 RNPC3Q96LT9 517 aaKnown RBP8.07□□□□□ -1.12
RIF1-201ENST00000243326 UNC13AQ9UPW8 1703 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 GPC4O75487 556 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 MCAMP43121 646 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 MIGA2Q7L4E1 593 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 C11orf74Q86VG3 221 aa8.07□□□□□ -1.12
RIF1-201ENST00000243326 KRT3P12035 628 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms